Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq816 682 0.0 seq334 493 5e-135 seq400 363 6e-96 seq24 271 3e-68 seq1667 125 3e-24 >seq816 Length=14434 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9241 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9182 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 9181 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9122 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 9121 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9062 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9061 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 9002 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 9001 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8942 Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10615 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 8941 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8882 Query 10616 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10675 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 8881 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8822 Query 10676 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10735 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8821 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8762 Query 10736 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10795 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8761 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8702 Query 10796 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10855 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8701 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8642 Query 10856 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10914 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8641 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8583 Query 10915 TAATTTCTGGTGTCATG 10931 |||| || ||||||||| Sbjct 8582 TAATGTCCGGTGTCATG 8566 >seq334 Length=953 Score = 493 bits (546), Expect = 5e-135 Identities = 337/378 (89%), Gaps = 5/378 (1%) Strand=Plus/Minus Query 30326 CCCATATCGATGGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGA 30385 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 953 CCCATGTCGATGGGCAACTCATGCAATTATTATGAGCAATACACCCGCGCTTCCAGCGGA 894 Query 30386 GTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCT 30445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 GTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCT 834 Query 30446 GTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGC 30505 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 833 GTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCTGCATCAACAGTTTTCTCCTGT 774 Query 30506 CCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGT 30565 |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 773 CCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGTCGGT 714 Query 30566 TTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTA 30625 |||||| |||||||||||||||||||||||||||||||||||||| ||||| || | | Sbjct 713 TTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGCGGCA 654 Query 30626 GCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAATCGT 30684 | | | |||||||||||| | |||| | ||| || || || |||||||| | Sbjct 653 GAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAATCCT 598 Query 30685 ATGTGTAGAAAATTAAAC 30702 ||||| | |||||||| Sbjct 597 ATGTGACAACAATTAAAC 580 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 30758 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 30817 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 451 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 393 Query 30818 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 30876 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 392 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 334 Query 30877 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 30936 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 333 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 277 Query 30937 CGG 30939 ||| Sbjct 276 CGG 274 >seq400 Length=38681 Score = 363 bits (402), Expect = 6e-96 Identities = 397/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 2962 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3021 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 35303 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 35362 Query 3022 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3081 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 35363 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 35422 Query 3082 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3140 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 35423 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 35481 Query 3141 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3200 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 35482 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 35541 Query 3201 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3260 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 35542 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 35598 Query 3261 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3320 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 35599 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 35658 Query 3321 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3380 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 35659 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 35718 Query 3381 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3440 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 35719 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 35778 Query 3441 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3484 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 35779 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 35822 >seq24 Length=857 Score = 271 bits (300), Expect = 3e-68 Identities = 248/310 (80%), Gaps = 5/310 (2%) Strand=Plus/Plus Query 29919 GGGCTG--AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAG 29976 |||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 532 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 591 Query 29977 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 30036 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 592 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 651 Query 30037 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 30096 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 652 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 711 Query 30097 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 30156 |||| || | || |||||||||||| || | ||| ||||| || |||| ||| Sbjct 712 CTCTGCGTGATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT-CAG 770 Query 30157 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 30216 | ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 771 --TCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 828 Query 30217 CAGACACCGC 30226 |||||||||| Sbjct 829 CAGACACCGC 838 >seq1667 Length=2119 Score = 125 bits (138), Expect = 3e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 28813 ATGGAAAAAATCACAACAGGTGTGTCATACACCACGTCAGCGGTGGGAACGGGCTACTGG 28872 ||||| || | ||||| ||||| | || ||| ||||| | | | || |||||| Sbjct 1885 ATGGATAAGTTAACAACGGGTGTCGCCTATGGCACCTCAGCAGGTAGTGCCGGTTACTGG 1944 Query 28873 TTCCTGCAGTTGCTGGACAGGGTTTCCCCGTCTCAGTGGGCGGCAATAGGCGTGCTGGGG 28932 || | ||| |||| || | || | || || |||||||| |||||||| |||||||| Sbjct 1945 TTTTTACAGCTGCTCGATAAAGTCACGCCCTCACAGTGGGCAGCAATAGGTGTGCTGGGT 2004 Query 28933 AGTCTGCTGTTTGGTCTGCTGACGTACCTGACGAACCTGTATTTCAAAATCAGAGAGGAC 28992 || ||| | ||||| ||||||||||||||||| ||||| |||||||| || | ||| || Sbjct 2005 AGCCTGGTATTTGGCCTGCTGACGTACCTGACAAACCTTTATTTCAAGATTAAAGAAGAT 2064 Query 28993 AGGCGTAAGGCGGCACGGGGAGAGTAA 29019 | ||| ||||| || | || || ||| Sbjct 2065 AAGCGCAAGGCTGCGAGAGGTGAATAA 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193519810487850