Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq367 203 7e-48 seq1599 105 1e-18 seq1417 87.8 4e-13 >seq367 Length=135625 Score = 203 bits (224), Expect = 7e-48 Identities = 288/405 (71%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 11872 CCCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTGC 11931 |||||| || || | || ||||| || ||||||| |||||| |||| ||| || Sbjct 45056 CCCAAAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGC 45115 Query 11932 TGCCATCATGTCATCGCGGCTCACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAAC 11991 || | || || || ||||| | ||| ||||| || || ||||| || ||||| Sbjct 45116 CGCGAGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAAC 45175 Query 11992 CTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACAG 12051 ||| | || |||| || || ||||| || || || |||| ||||| |||||| Sbjct 45176 CTCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAG 45235 Query 12052 GTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCACGTC 12111 |||||| |||||||| |||||||| | | | |||| ||| ||| | || | ||| Sbjct 45236 GTTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTC 45295 Query 12112 CTCCTGGTTCTGCGCGGCGTCAGTCATGTACATGATGAAGCCTGCGTGGCTACCGTTAAT 12171 ||| | |||||||| ||||| |||||||||| ||||| || || ||||| ||||| | Sbjct 45296 CTCTTCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTT 45355 Query 12172 GTAGTACTTCCGGCGGAACAGTGTTGCGGACTCATTCAGCAGGGCGGAAGGGATAGCTGA 12231 ||||||||| || |||||||| || ||| ||| || ||||| ||| | | |||| Sbjct 45356 GTAGTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGC 45415 Query 12232 CAGATATTCCGGCAGACCGTAAATCTCCTGGTTTAAATCCGGCTC 12276 ||| | |||||||| ||||| || |||||||| | ||| | ||| Sbjct 45416 CAGCCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTC 45460 >seq1599 Length=1184 Score = 105 bits (116), Expect = 1e-18 Identities = 226/338 (67%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 25532 TGAGGACCACCGTGGCGAGACGGTTTACGACACAACAACCGGCAATCAGGTTTATATCTC 25591 ||| ||||| || || | |||||||| ||| | ||||| | | | | ||| || Sbjct 1149 TGAAGACCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCGACGCGTTATTTATTTC 1090 Query 25592 CTCTCCCGGTCCGCTACCTGAAAACGTCACATCAGTTTCACCTGATGGTGAATATCAGAA 25651 | ||||||| |||| ||||| || || | | || || | || ||||||||||| Sbjct 1089 TGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTGTCGCCGGGAGGGGAATATCAGAA 1030 Query 25652 ATGGAATGGTAAGGCGTGGGTAAAAGACGAAGTGGCTGAAACAGCGGCCAGACTTCGTGA 25711 ||||| || | || ||||| || || | || |||| | | | | | || || Sbjct 1029 GTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGA 970 Query 25712 AGCTGAAGGAACCAAAAGCCGTCTTTTGCAAACAGCAGCGGAGAAAATCGCGCCATTACA 25771 || |||| ||| |||| | | || |||| ||| ||| | || |||||| | || Sbjct 969 GGCAGAAGAAACAAAAAACAGCCTGATGCAGGTAGCCAGTGAGCATATTGCGCCACTTCA 910 Query 25772 GGATGCTGTTGATCTTGAAATCGCAACAGATGATGAGAAAGTGCAGCTCGACGAGTGGAA 25831 ||||||||| ||||| ||||||||||| || || || | | ||| || | ||||| Sbjct 909 GGATGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCCTGGAA 850 Query 25832 AAAATACAGGGTGTTGGTAAACCGGGTAGATACCACAA 25869 || || |||||||| | ||||| || |||| |||| Sbjct 849 GAAGTATCGGGTGTTGCTGAACCGTGTTAATACAACAA 812 >seq1417 Length=11336 Score = 87.8 bits (96), Expect = 4e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 37 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 84 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11229 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 11276 Score = 87.8 bits (96), Expect = 4e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 34070 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 34117 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11229 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 11276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109034663496990