Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq404 196 9e-45 seq689 165 2e-35 seq531 111 3e-19 >seq404 Length=78127 Score = 196 bits (216), Expect = 9e-45 Identities = 621/947 (66%), Gaps = 33/947 (3%) Strand=Plus/Plus Query 213471 ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCT 213527 ||||||| || ||||| || ||| |||||||| |||||||| || | ||||| Sbjct 48950 ACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAG--- 49006 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||| | | ||||| ||||| |||||| ||| |||||||||| || ||||| ||| Sbjct 49007 GTGTATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGG 49066 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 |||||||| || ||| | ||||||||||| || || |||| || ||||| | ||| Sbjct 49067 TTTGACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGC 49126 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC---CGCCTGACAGCTCCG 213704 ||| | | || | |||||| | |||||||| | || | || | || Sbjct 49127 GACTCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCT--- 49183 Query 213705 GGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAG 213763 || || |||||||| | |||||| || ||| |||| |||||| | | | | || Sbjct 49184 GGGGTGGCCTCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCAG-CGAG 49242 Query 213764 TCCCGGA--CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGC 213821 || || | | || ||||| | ||| |||| || ||| | ||| | || | Sbjct 49243 ACCTGGGGCCTCGTTG--GGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCC 49300 Query 213822 ATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT 213881 || || || || | ||||| || ||| || ||||| | || | | |||| ||| | Sbjct 49301 ATAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTT 49360 Query 213882 CCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAG 213941 || ||| ||||| || || || || || | || || |||||||| ||||| | |||| Sbjct 49361 CCGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAG 49420 Query 213942 ATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCAC-CAGCCTGGCCACCAT-GT 213996 ||||||||||| ||| | |||| || || ||||| || ||| | || | || Sbjct 49421 ATGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGC--GAGCAGTGTCGT 49478 Query 213997 TGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATAC 214055 |||| | ||| || | ||| || || |||||||| ||| |||||||| || ||||| Sbjct 49479 TGAACACGCGAAGCATGGGAACGAGACCGTTGGA-TGTACCGTTGGTGCCGCGGATATAT 49537 Query 214056 GAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATC 214115 || | || || | | ||| | | ||| || ||||| ||||| |||||||||| Sbjct 49538 GAACGGGCAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATG 49597 Query 214116 ATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGC 214175 | |||||| || | | || || ||| || | || |||||| | | | | Sbjct 49598 AGGGCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGACA 49657 Query 214176 AAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCA 214235 | |||||| ||| | || ||| | | | ||| ||||| || || || ||| |||| Sbjct 49658 AGGAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCG 49717 Query 214236 TGGATCATAAACTTG---TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 ||| |||| | | | || || || |||||||| | | | | | |||||| Sbjct 49718 TGG---GTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCG 49774 Query 214293 TGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCT 214352 |||||| |||| | | ||| |||||||||||||| | ||| ||| | Sbjct 49775 GCGCCGTGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACG 49834 Query 214353 TTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAA 214399 | | | | ||| |||||| ||||||| |||||||| ||||| Sbjct 49835 TCGTCGATGCGGTGCAAGTAGGAACGCTCCAAGGTCTTGAAGCCAAA 49881 >seq689 Length=46727 Score = 165 bits (182), Expect = 2e-35 Identities = 349/516 (68%), Gaps = 20/516 (4%) Strand=Plus/Minus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTG 47917 || || || ||||| ||||| | || ||||||||| ||||||| || ||| |||||| Sbjct 18585 TTTTCGAAAAAGTTGGTCTTGCGCTGCAACGAGATCATCTCCATCCAGTCGAATGGGTTG 18526 Query 47918 GGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCG 47977 | | ||| || | | | | ||| | | || || | || ||| |||| Sbjct 18525 GCAGAGTTGTAGATCTTTTTGTAGCCGAGGGCGACGAGTAGACGGTCGGCGCAAAACTCA 18466 Query 47978 ATGTATTTTGACATGAGGGTGA-TGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGT 48036 ||||||| |||||| | || |||||||||| ||||| ||||| | | || || Sbjct 18465 ATGTATTGGGACATG-GCACGACTGTTCATGCCAATGAGATCGACGGGAAGTGACTCGGT 18407 Query 48037 GAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGA 48096 || |||||||||||| | ||||| || | | ||| || || || || | Sbjct 18406 GACAAACTCCTTCTCACAGTCGACGGCGTCGCGGATGATCGACT---CGATGGTCTTGGC 18350 Query 48097 GG---GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | | |||||| | | |||||| ||||||| ||||||||||| | |||||| || Sbjct 18349 GTCGAGCTTGTTG---ACGAGCTTGGTGTAGAGCAGACAGGCAAAGTCGCAGTGCAAACC 18293 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 |||||| |||||||| | | ||||||| ||| | ||| ||||| | || | || || Sbjct 18292 TTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAAACCTGGCATCAATCCACGCTTCTT 18233 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||| || |||| |||| |||||||| ||||| ||||| || || || ||||| Sbjct 18232 GAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAAGATACCCTCGACGGCTGCAAACGC 18173 Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG---TCTGAGATCCAGGAAAGCGCCCAGTC 48330 | | ||| | || || |||| | ||||||||| | |||||||| Sbjct 18172 CACCAAACGCTCGGCAAACGA------CTTGGAATTTGAGATCCATCTCAATGCCCAGTC 18119 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||||||||| ||||| || ||||||||||| Sbjct 18118 AGCCTTCTTCTTGACACATGGAATAGTCTCTATGGC 18083 >seq531 Length=89189 Score = 111 bits (122), Expect = 3e-19 Identities = 176/252 (70%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 48115 CTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCAC 48174 |||| |||||| | ||||||||||| | || || ||||| || || ||||| | | Sbjct 87853 CTTGCTATAGAGTAGACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTC 87912 Query 48175 GTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAA 48234 ||| ||| | ||||||||||| | || | | ||||||||||| || | ||| Sbjct 87913 GTTCGAGTGGGCCAGACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAA 87972 Query 48235 AGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA 48294 | |||||||| ||||| || || ||||| || || || || |||||| | || || Sbjct 87973 ACTTCCAGAGAAAAAGATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGA 88032 Query 48295 AGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCAT 48354 || |||| | ||||| ||| ||||| || |||||||| |||| ||||| || Sbjct 88033 TGCAGAGTTGTTT---ATCCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAAT 88089 Query 48355 CGTCTCTATGGC 48366 |||||||| || Sbjct 88090 TGTCTCTATAGC 88101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931369723539200