Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq404 163 5e-35 seq689 113 8e-20 >seq404 Length=78127 Score = 163 bits (180), Expect = 5e-35 Identities = 785/1234 (64%), Gaps = 22/1234 (2%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || ||||||||| ||||||||||| ||| ||| || ||||| ||| | Sbjct 48677 GTGAGGGCAGCGAAATAGATGGTCTCGGCAATCTCGCGGTTAAGG---TTGGCAGCGGCA 48733 Query 221477 G---AAGTGAAGGGCATACGCA--GC-ATCTGAAAGACGTCGGCCAGTCCCTGTACTCCG 221530 | || ||| |||||||||| || || |||||||||||| || || || | ||| Sbjct 48734 GTCGAATCGAATGGCATACGCATGGCGAT---AAAGACGTCGGCGAGACCTTGGATACCG 48790 Query 221531 ATACCGATGGGCCTGTGTCTCCTGTTGGAAG--CGGCCGCTTCTGGCACGGGATAAAAGT 221588 |||||||| || | || | | ||||||| | ||| || ||| | || || || ||| Sbjct 48791 ATACCGATTGGACGATGACGCATGTTGGAGGTACGG--GCCTCTTGAACAGGGTAGTAGT 48848 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648 || ||| || | ||||||||| ||||||||| || || || | | Sbjct 48849 TGCGGTCAATGATGCGGTTGAGGTTGCGAGTGATGATACAGGTCATTTCAAAGAGATGTT 48908 Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 |||| || || |||| || | | || | ||||| | |||||||| Sbjct 48909 GGTGGTTAAAGTGGGCGGGAACGCCATCCTTGGCTGGCACAACAAACTTGGGTAGGGCAA 48968 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 ||| ||||| ||||||||||| ||||| ||| || || | |||||||| | Sbjct 48969 TCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTGTATTGGACAATCTCTGTGC 49028 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 |||||||| ||||| |||||| || || | | || || |||||| |||| |||| Sbjct 49029 AGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTTGACTTGGCATTGCAGGCGT 49088 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 |||||||||| ||| | || ||||||||| | ||| | | | | ||| | ||||| Sbjct 49089 CCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGACTCGATAATGGAGAACCAGA 49148 Query 221889 GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG-TCTTTTCATACCCGGTATAG 221947 | ||| ||| | | ||| | ||| | ||| || | || || | ||| ||| Sbjct 49149 GATCTTGGGCCTTGATGGTCTTGC-GACCGAGACCTGGGGTGGCCTCGTAGCGGGTGTAG 49207 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | |||| || || | || | || ||||| | | |||||| | Sbjct 49208 AGAGCGCGGAACTCGTCTCCCCAGCAATCAGCGAGACCTGGGGCCTCGTTGGGACAAAAG 49267 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||| | |||| | | ||| | || ||| ||||| || | | ||| || || Sbjct 49268 AGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAAAGAGATCGGATACCCAGAGGGCG 49327 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | |||||| || | || ||| ||| ||| |||| ||| || | || || | ||| Sbjct 49328 TAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGGTTCTTGCGAAGGTCAAGGAAC 49387 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || | | || |||||||| ||||| || |||| ||| | || || |||||| Sbjct 49388 TCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGGCAAAGGCTCCCTTGCGCTTGCCA 49447 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 || || || || || | | || | ||||||| | |||||| | || || || || Sbjct 49448 CCTCCTTGGTCGACGTAGCGAGC-AGTGTCGTTGAACACGCGAAGCATGGGAACGAGACC 49506 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||||||| |||||||||||| || || | || | | || | | || | ||| Sbjct 49507 GTTGGATGTACCGTTGGTGCCGCGGATATATGAACGGGCAGCGCGGATCTTGTGGACAGC 49566 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 | || || || ||||| || ||||| | |||||| |||||| || || ||| Sbjct 49567 GAGACCAATGCCTCCGGCCGACTTGGAGATGAGGGCGCATTGCTTGAGGGTATCGTAGAT 49626 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426 || || || ||||| ||||| | | | || || || |||||||| || | | Sbjct 49627 ACCATCGATCGAGTCATCCTTCATCTGGACAAGGAAGCACGACGACATTTGTGGCGAGCA 49686 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 || | | |||||| || || || ||||||| |||||||||| | || | | | || Sbjct 49687 GGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGGGTAAAGTAGCGCTGGGAAAGCTGCTC 49746 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 || ||||| | | | | | |||| | | ||||| || | | | | |||| Sbjct 49747 ATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCGTGGATACCAAGAGAGACACGCATGAG 49806 Query 222547 CATGTACTGGGGCCTCTCCA-CAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||||| |||||| | ||| | | || | | | | || | ||| ||| || |||| Sbjct 49807 CATGTGCTGGGGACGCTCAATGATGA-CGTCGTCGATGCGGTGCAAGTAGGAACGCTCCA 49865 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 |||||||| ||||| ||| | |||||||| Sbjct 49866 AGGTCTTGAAGCCAAAAAAGTCGTACTCAAAGTC 49899 >seq689 Length=46727 Score = 113 bits (124), Expect = 8e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 |||||| |||||| |||| || ||||| || || ||||| ||||||||| ||| || Sbjct 18153 CGTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTTTTCTCTGGTA-GT 18211 Query 25928 TTGCGGCCA-TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 || | || |||| ||||||||| || || ||||| || || |||||||||| Sbjct 18212 TTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTCCAAC 18271 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||| | |||||| | ||||| ||| | ||| | || |||||||| ||||||||||| Sbjct 18272 GAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCCTGTCTGCTCTACAC 18327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928682194107200