Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq469 210 3e-49 seq160 93.3 6e-14 >seq469 Length=409663 Score = 210 bits (232), Expect = 3e-49 Identities = 608/923 (66%), Gaps = 32/923 (3%) Strand=Plus/Minus Query 178630 GCTGTAAACTGGAACAATCCAGATAACGATTA---TGCCCAAATGTTCTGGGATCAAAAT 178686 || ||||||||||| | || || || ||||| ||||| |||||||||| || || Sbjct 223282 GCCGTAAACTGGAATACCCCCGAAAATGATTACAGTGCCC---TGTTCTGGGAACAGAAC 223226 Query 178687 ATTAAACAATTCTGGATCGATACAGAATATGTACCTTCTAACGATATA-ACTTCTTGGAA 178745 | | ||||||||| | ||||| |||||| ||||||| || || || || || | || Sbjct 223225 CTGAGGCAATTCTGGGTGGATACTGAATATATACCTTCCAAAGACATTGACAGCTGGAAA 223166 Query 178746 GTCGTTAGAACCTGAAATGAAGAAAACATACATGAGAGCTTTAGGAGGTCTTACATTACT 178805 | || || ||||| || | | || | || || | |||||| | || | || Sbjct 223165 GGACTTTCT-CCGGAAATCCAGCAGGCTTATAAAAGGGCCCTGGGAGGTTTGACCCTGCT 223107 Query 178806 TGACACTTTACAAAGTCATACAGGTATGCCTAAGATCATAGATCATATCGACTCTCTACA 178865 ||||| | ||||| || || || ||||| || || | || ||||| || || || || Sbjct 223106 GGACACCCTGCAAAGCCACACCGGAATGCCCAAAATTCTGGACCATATTGATTCGCTGCA 223047 Query 178866 AAACAAAGCTGTATTATCGTATATGTGTATGATGGAAGCGATACATGCTAAATCATACTC 178925 ||| ||||| || | || | |||||||||||||||||| || ||||| ||||| || || Sbjct 223046 AAATAAAGCCGTGCTTTCTTTTATGTGTATGATGGAAGCCATTCATGCAAAATCCTATTC 222987 Query 178926 AACGATATTTACAACAGTAGCTAATAAAGATGAAATCGATGAAATCTTTAGTTGGATAAC 178985 ||||| |||||||| || | | || | | |||||| ||||| | ||| ||| || Sbjct 222986 CACGATTTTTACAACCGTGACCACTACACAAGAAATCAATGAACTTTTTGACTGGGTACA 222927 Query 178986 TACAAACCCTCAGATTCAATATAAAGCTAGTGTTATCGATTCTTACTATCAAAAGTTAGC 179045 | | ||| | | || | |||||| || || || || | | | Sbjct 222926 TGCCAACAAATACCTGCAGTTTAAAGCAGCAACAATTGACCGCTATTACCGCGCCCTGGA 222867 Query 179046 AAATCCTGAAGTCGATCCAAAGGATTTATTCATGGGGTTAGCTGCATCAGTAATGTTAGA 179105 || | || || | || || ||| ||| || | || || || || | || Sbjct 222866 CAAAAAACAGGTGAATGATGAAGAATTGTTCCTGGCTTTGGGCGCTTCGGTTCTGCTGGA 222807 Query 179106 ATCATTTCTATTTTATTCTGGATTCTTTTTACCATTATATCTTTCTGGTAACGGTAAGAT 179165 ||| ||||| ||||| ||||||||| | || | | |||| || | ||| | || Sbjct 222806 ATCTTTTCTGTTTTACAGCGGATTCTTTATGCCCCTTTGGCTTTGCGGACAAGGTGAAAT 222747 Query 179166 GAAAGCTTCAGCTGATATCATTAAGAAAATCGTAGCTGATGAATCTATTCATGGTGTATT 179225 | || || ||||||||||| || ||| | || ||||||||||| ||||||||||| Sbjct 222746 GGTCGCCAGTGCCGATATCATTAAAAAGATCATTGCCGATGAATCTATACATGGTGTATT 222687 Query 179226 CGTTGGATTACTTGCACAAGAAGTTTACAACACTTTCGATGATACTACAAAGAAAGAATT 179285 ||||| | | || || || ||||| || || || || | ||||| | Sbjct 222686 TGTTGGCCTGTTGGCCCAGGATGTTTATAAAACACTCCCCCAT-CCGCAAAGGGCG---- 222632 Query 179286 AAAAGATGAACTGTTAAGAACTATTTACAG----TTTATACGAAAACGAAGCT-AAGTAT 179340 |||||| ||||| | | | ||| ||||| ||||| | |||| || || Sbjct 222631 -AAAGATAAACTG--ACCGCCCTGCTGCAGGAACTTTAT--GAAAATG-AGCTAAAATAC 222578 Query 179341 ACTGATTACATTTATACCGAAGTTGGATTATCTTCAGATGTAAAAGAATACGTTAAATAC 179400 ||||| | | |||||||| |||| | | | || ||||||||||| || ||| Sbjct 222577 ACTGAAGAGGTCTATACCGACATTGGCCTTACCGCTGAGGTAAAAGAATATGTACGTTAC 222518 Query 179401 AATGCTAATAAAGCTTTGATGAATCTTGGATTCGATCCAGAATTCACACATGGTGAAA-- 179458 ||||| || ||||| ||||||| |||||||| || ||| | | ||| ||| Sbjct 222517 AATGCCAACAAAGCCCTGATGAACCTTGGATTTGA---GGAACTTTTTGA-GGTAAAAGA 222462 Query 179459 --TAAATCCAATCGTATTGAATGGACTTAACACCGAAACAACTCAACATGATTTCTTTTC 179516 | || || || ||||| || ||| | ||| ||||| || ||||||||||||||||| Sbjct 222461 GGTGAACCCGATTGTATTAAACGGATTAAACCTGGAAACCACACAACATGATTTCTTTTC 222402 Query 179517 TATGAAATCTACTAATTACGAAA 179539 | ||||| || ||||| |||| Sbjct 222401 AAAAAAATCGACCAATTATGAAA 222379 Score = 188 bits (208), Expect = 1e-42 Identities = 478/723 (66%), Gaps = 8/723 (1%) Strand=Plus/Minus Query 173007 GCTGAAATCATGATTAATCAGGAATATCAACCTGCTACCCCGACATTCTCAAACGCTGGA 173066 || || ||| | |||||||||||||| || || || ||||| || || || || || Sbjct 224992 GCGGAGATCCTCATTAATCAGGAATACCAGCCGGCCACCCCTACTTTTCTGAATGCCGGT 224933 Query 173067 AAACTTAAAGGT---GGTGAATTGGTATCATGTTTCTTAGATGAAATCGGTGATTCTAAA 173123 ||| ||| || ||| ||||||| || ||||| | ||||||||||| || | Sbjct 224932 AAA---AAACGTTCTGGTCAATTGGTTTCCTGTTTTCTGGATGAAATCGGAGACAACATC 224876 Query 173124 GTTGGAATATCCAAATCTATTCAAGCCGCATTGGATTTATCTTCGATGGGTGGAGGTGTA 173183 ||| || | | ||| | | || || | | ||||| || ||||| || ||| Sbjct 224875 AATGGGATTGGTTATGCCATTGACTCGGCCATGAAACTCTCTTCTATAGGTGGCGGGGTA 224816 Query 173184 TCGTTTAACGTATCTAAATTACGTGCACGTGGTGAAGCTATTAAAGGAATCGACGGAAGA 173243 || |||||| | || ||| |||| || || || ||||| |||||||| | || || | Sbjct 224815 TCTTTTAACCTTTCCAAAATACGGGCGCGCGGGGAAGCCATTAAAGGTGTGGAGGGCCGG 224756 Query 173244 GCTTCAGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAA 173303 | || || | || || |||||||| || |||||| |||| || ||||| ||||| Sbjct 224755 TCCAGTGGCGTGCTTCCGGTCATGAAAATTCTGGAAGATACTTTCTCCTATGCCAATCAG 224696 Query 173304 TTAGGACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATCTTCCATTCAGATGTTGAA 173363 | || || || ||||| || || || | || | ||| | || ||| | || ||||| Sbjct 224695 CTTGGTCAGCGGCCAGGGGCGGGCGCGGTATACCTGAATGTTTTTCATACCGACATTGAA 224636 Query 173364 GAATTTCTAGATTCTAAGAAAATCAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCG 173423 |||||||| |||| ||| || |||||| |||||||| | | | ||||| ||||| Sbjct 224635 GAATTTCTGGATTGTAAAAAGATCAACATCGACGAAAAGGTAAGGATCAAATCTCTTTCT 224576 Query 173424 TTAGGTGTTATCGTTCCTGACAAATTCATGGAATTAGCTG-AGAAGGATGAACCATTTTA 173482 | ||||| | | || || || || ||||| | |||| || | ||||| | ||| Sbjct 224575 ATTGGTGTGGTGATCCCGGATAAGTTTATGGACATTGCTGCAGCA-GATGAGATCTGTTA 224517 Query 173483 TGTTTTCTATCCATATACAGTTAAGAAAGAATACGGTAAACATCTAGATGATTTGGATAT 173542 | |||| |||||| |||| || | ||||||| | | | | ||||| ||||||| Sbjct 224516 TCTTTTTTATCCACATACGGTATTTCAGCAATACGGCATCCCTTTGGATGAAATGGATAT 224457 Query 173543 CGATACAATGTATTCCGAATTAGTTTCTAATCCTAATGTTAAGAAACGTAAGTTAAATGC 173602 ||| |||||| | | | || || || || || ||| ||| | ||||| Sbjct 224456 GGATCAAATGTACGACCAGCTGGTAGGCAACCCCAAAGTCCGCAAAAAAAAGGTCAATGC 224397 Query 173603 TAGACGTATGTTAACTAAGATTGCACAAGTTCAGAAAGAATCAGGTTATCCATATTTCTT 173662 | | | | | ||| || || || || || ||| |||||||| ||||| || Sbjct 224396 CCGGCATTTAATGGTTAAAATAGCGCAGACCCAAAAGGAAAGTGGTTATCCGTATTTATT 224337 Query 173663 CTTGAAAACTAATGCTAACGAATATCATCCTTTGAAGAATTTGGGAGACGTTAAGTTTTC 173722 || ||| ||||| || || | ||| |||| | ||| |||| || || || || || Sbjct 224336 TTTTAAAGGCAATGCCAATAAAGAACATGCTTTACAAAATCTGGGGGATGTAAAATTCTC 224277 Query 173723 TAA 173725 ||| Sbjct 224276 TAA 224274 >seq160 Length=487619 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 139827 TATTTGCATATCGTGTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATG 139886 ||||||| |||||||| ||||| || ||||||| |||||||| || |||||| | Sbjct 205074 TATTTGCCTATCGTGTGGCCGATCCGGAGCGATATGGCGTAGTTGAGTTTGATGAAAACA 205133 Query 139887 ATAACGCTGTTTCGATCGAAGAAAAACC-TTTGAATCCTAAATCTAATTACGCAGTACCA 139945 | || || |||| || ||||||||||| |||| || ||||| |||| || || || Sbjct 205134 AGAAGGCCATTTCTATAGAAGAAAAACCAACTGAA-CCAAAATCCGATTATGCTGTCCCG 205192 Query 139946 GGCTTATATTTCTATAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCT 140005 || | ||||||||| | ||| || | || | || || | || ||||| || | Sbjct 205193 GGACTTTATTTCTATGACAACTCGGTGGTGGAGATTGCCAAAAACATTAAACCATCTCCA 205252 Query 140006 CGTGGAGAATACGAAATATCAGAT---ATTAACGCATAT 140041 | || || |||||||| ||||| | ||| |||||| Sbjct 205253 AGAGGGGAGTACGAAATTACAGATGTCAATAAGGCATAT 205291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701739530213600