Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq215 235 2e-57 seq400 107 6e-19 seq1656 104 7e-18 seq1667 95.1 4e-15 >seq215 Length=48791 Score = 235 bits (260), Expect = 2e-57 Identities = 560/838 (67%), Gaps = 10/838 (1%) Strand=Plus/Plus Query 22737 ATGTGGGCGTCATC-AGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCAATG-CGAAG 22794 ||||||||||| || ||| |||| || | || || || | |||||| | | | ||| Sbjct 12378 ATGTGGGCGTCGTCGAGC-TTCGCCAAGCAGGGTCGCACAG-TCTTGGGCCAGGCCGAGC 12435 Query 22795 AAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGAAT 22854 |||| | | || || || || ||||| || | | ||||| || ||||||| ||| | Sbjct 12436 AAGTAGCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATT 12495 Query 22855 GGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGTGCT 22914 ||||||| | || |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 12496 GGTTCGGCGATGTGCCGGCATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCA 12555 Query 22915 CCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTACTG 22974 |||| | || |||||||| || | || || |||||||| ||| | ||||| || | Sbjct 12556 GCGACCTTGAGTTCTGCGCCTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCG 12615 Query 22975 ATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGCGCG 23034 | | | |||| || ||| | | || ||| ||| | | || ||| | Sbjct 12616 ACAAGTACGGTCAACCAGCATTCACCCAAGA---CGGTGCACCGAAGATCAAGCTGCAGG 12672 Query 23035 GTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCCGTGACGTGC 23094 | ||||| || || || ||||| || ||||| |||||||| |||||||||| |||||| | Sbjct 12673 GCCACGACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGCTATGGTGCAAGCCCTGACGTTC 12732 Query 23095 AGGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATGTGGCGAGGG 23154 | | |||| ||||| ||||||| | | || |||| | | | | ||||||| Sbjct 12733 AAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGG 12792 Query 23155 CATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTAT-GACGAGTGGT 23213 | |||||||| || | | | || ||| || ||| ||||| | | | |||| || Sbjct 12793 CCTGCGGAACCTGTCTGCTCAGATCGGCCTG--ATTCTTGACAGGCTCTAGACGGATGAG 12850 Query 23214 GATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGCCTGCT 23273 ||||||||| | || ||| | || ||| ||||| |||||| | | || |||| Sbjct 12851 AATTTATGGCAGCCCTGAAAAATGAGGTGAAGAGCTTCATCGTTCAGGCGCTGGCGTGCT 12910 Query 23274 TTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCGATTACTC 23333 |||| |||||||| |||||||| || |||||||| || |||| ||| ||| | | | | Sbjct 12911 TTGACACCCCATCCCAGGTGGTGGAAGCCGTCAAGAACGAATACGGGGTTGTGGTGAGCC 12970 Query 23334 GGCAGCAGGTTGAATCTCATGACCCGACAAAGGCAAATGGTAGGGGGTTGGCTCAAAAGT 23393 | |||||||| || | || ||||| || ||| | |||| ||| |||| |||| Sbjct 12971 GCCAGCAGGTGGAGACGCACGACCCAACCAAGTCCGCGGGTAAGGGTCTGGCGGTGAAGT 13030 Query 23394 GGGTGGATATATTCAACTCTACGCGAGAGCGCTTCCAGAATGAAATCTCCGACATCCCCA 23453 ||||| | ||| || || | |||| |||| | || | | | || ||||| | Sbjct 13031 GGGTGACCCTTTTCCACGACACCAGGAAGCGGTTCCGAGAGGAGACCGCAGAGATCCCGA 13090 Query 23454 TAGCCAATAAAGCCTATCGTCTGCGCGTGCTGCAAAGAATGTCTACGTCGGCCGAGAATA 23513 | ||||| |||| || || || | ||| | || | | ||||||||| | Sbjct 13091 TTGCCAACCGCGCCTTCCGGCTTCGTGGCCTGGGGCGGCTGGCCGGGAAGGCCGAGAACA 13150 Query 23514 TGAAAAACATGGGGATGACAGCTCAGCTACTGGAGCAGGCTGCTAAAGAGGTTGGTGA 23571 || ||| ||| | |||| || ||||| ||||| || || |||||| ||||| Sbjct 13151 TGCGCAACCTGGCGCTGACTGCCCAGCTTTACGAGCAAGCAGCCAAAGAGACGGGTGA 13208 >seq400 Length=38681 Score = 107 bits (118), Expect = 6e-19 Identities = 189/268 (71%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 14669 AAACTGGAATTGAATCTGGATGCTCAGGAACTGGAAATGCTGCGCCGGAATTGTGCTGCG 14728 |||||||| ||| || || | |||||| |||| |||||| ||||| ||||| | | Sbjct 6253 AAACTGGAGCTGATGCTCGACGAGCAGGAAATGGAGATGCTGGCGCGGAACTGTGCGGAG 6312 Query 14729 CGGCGACCAGGCAAAGAGCCATACGATATGGACGAGTATATCCAGATGCTGATCCGTCAG 14788 || || || || | ||||||||||| | |||||| ||| |||| ||||| ||| Sbjct 6313 CGTCGCCCGGGTAGGGAGCCATACGAACTTAGCGAGTACATCGCTCTGCTTATCCGCCAG 6372 Query 14789 GATGATGCGCGCGTGCGCCAAAAAATAAAGGCGATC--GGTCATCGTATTTGCGGGAAAT 14846 ||||||||||| |||||| | || || || ||| | || | | |||||||| | Sbjct 6373 GATGATGCGCGGGTGCGCGGACGCATCAAAGCCATCAGCGCCAAC--AAGTGCGGGAAGT 6430 Query 14847 GCGGTGAGTCTTTGCCAGTGGATTCATGCTGCATG-ACTGGCGACTCTGCGTGCTGGAAT 14905 ||| || |||| ||| | || ||| | || | || || ||||| |||||| | Sbjct 6431 GCGACGACATCCTGCCGGTGAAGTCCTGC-CCGTGCGCCGGTGATTCTGCCTGCTGGGTT 6489 Query 14906 AC-CAGTGGCTGGCACGAAATGAAATTA 14932 || ||| ||||||||||||| |||| || Sbjct 6490 ACGCAG-GGCTGGCACGAAACGAAACTA 6516 >seq1656 Length=3181 Score = 104 bits (114), Expect = 7e-18 Identities = 109/140 (78%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 375 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCATT 434 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 637 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATG 696 Query 435 GATTTAAAAAGAATTAAAACAAGCACTTATGTGCAATGTCGT-AGACCGCCGAGAGGCGG 493 | | |||| ||| ||||| || ||| |||||| | ||| || || || Sbjct 697 GGAAACATCAGAA-TAATCAAAGCA---ATAAGCAGTGTCGTGAAACCACCTTCGGGTGG 752 Query 494 tttttttGTGCCTGAAAGTC 513 ||||||||||| || || || Sbjct 753 TTTTTTTGTGCATGCAATTC 772 >seq1667 Length=2119 Score = 95.1 bits (104), Expect = 4e-15 Identities = 93/118 (79%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 20099 CAGTGGGCTGCGATCGGTGTGCTGGGTAGCCTGGCGTTTG--CTGGCCTAACGTTTCTAA 20156 |||||||| || || ||||||||||||||||||| |||| ||| || |||| || | Sbjct 1978 CAGTGGGCAGCAATAGGTGTGCTGGGTAGCCTGGTATTTGGCCTG--CTGACGTACCTGA 2035 Query 20157 CGAATCTGTATTTCAAGATTAAAGAAGACAGACGCAAAGCGGCGCGGGGTGAGTGATG 20214 | || || |||||||||||||||||||| | ||||| || ||| | ||||| | ||| Sbjct 2036 CAAACCTTTATTTCAAGATTAAAGAAGATAAGCGCAAGGCTGCGAGAGGTGAATAATG 2093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154905433488960