Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq400 93.3 1e-14 >seq400 Length=38681 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 18794 CGACTGGTCGAGATTGACCAAATGGACGTGCTGGACATCCTGAAAGAGGATGGGGCACTC 18853 || ||||| || |||||||| |||||||||||||| |||||||| || || || | | Sbjct 7253 CGCCTGGTTGAAATTGACCAGATGGACGTGCTGGATATCCTGAACGACGACGGCGGGATG 7312 Query 18854 AAGCCGATCAGCGAGTGGCC-AAAGTGCTGGCGAACCACATTGAGCGGGCTGGACATCAA 18912 ||||||||| || ||||| ||||| |||||| ||| || | |||| | |||| ||| Sbjct 7313 AAGCCGATCGCTGAATGGCCGAAAGT-CTGGCGTACCTCACTAAGCGCGATGGATATCGC 7371 Query 18913 TACCA 18917 ||||| Sbjct 7372 TACCA 7376 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 18953 ATCCTCAAGAAGATCAAGTGGCCGGACAAGGTGAAGAACCTAGAGCTTATCGGCAAGCAT 19012 ||||| |||||| | |||||||||||||||||||||||||| || || || || ||||| Sbjct 7448 ATCCTGAAGAAGGTAAAGTGGCCGGACAAGGTGAAGAACCTCGAACTGATTGGTAAGCAC 7507 Query 19013 GTCCGCGTCGGGGCATTCAAAGAGC 19037 ||| ||| || |||||||||| Sbjct 7508 GTCGACGTTAACGCGTTCAAAGAGC 7532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139218442816530