Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq6140 141 3e-29 seq362 116 1e-21 seq7603 111 5e-20 >seq6140 Length=1248 Score = 141 bits (156), Expect = 3e-29 Identities = 341/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || ||||||||| || || |||||| ||| |||| || | || | Sbjct 956 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 897 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 | || || || | ||||||| || || ||||| || || ||||| | || ||| Sbjct 896 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 837 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||| | |||||||| ||||| | |||| | |||| || || |||||||| Sbjct 836 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 777 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || |||||||| || |||||||||||||| || |||| ||| || ||||| Sbjct 776 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 717 Query 45734 TCGTGGAAAGGGGCTGACG---GGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAA 45790 || ||| | | | |||| || | | |||| || |||||| || | | | Sbjct 716 TCCTGGCCTGCGCCCGACGGCCGGCATA---TCGATCAGATTGCGAATCTCGTCAGTGCG 660 Query 45791 ATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTG 45850 || |||| || || | |||||||| || | || ||| ||||| ||| | Sbjct 659 ATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTC 600 Query 45851 GGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGG 45910 | |||||| | |||| || || || | | || ||||| ||||| || | || | Sbjct 599 GATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAG 540 Query 45911 TTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATC 45970 | || ||| | | ||||| || | ||||| ||||| || ||||||| || ||| Sbjct 539 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 480 Query 45971 GCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || |||||| ||| |||| | ||||| || || Sbjct 479 GCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 445 >seq362 Length=339261 Score = 116 bits (128), Expect = 1e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 |||||||||||||||| | | || |||| |||| || | || ||| | ||||| | Sbjct 148585 GGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAG 148526 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | || || || || || || ||||| | ||| | || || || | |||||| ||| Sbjct 148525 GCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGATCT 148466 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||||| || || || ||| || |||| || | | || ||| | ||| |||| Sbjct 148465 GGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGG 148406 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | |||||||| ||||||||||| || || ||||| | || || | |||||||| || | Sbjct 148405 ATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTCAT 148346 Query 45738 GG 45739 || Sbjct 148345 GG 148344 >seq7603 Length=749 Score = 111 bits (122), Expect = 5e-20 Identities = 394/606 (65%), Gaps = 16/606 (3%) Strand=Plus/Plus Query 45524 TTCGGCCGTCAGCTGCGCTTTAA-CTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAA 45582 ||||| | ||| |||| || | ||||| | |||| || |||||||| || || || || Sbjct 141 TTCGGTCACCAGATGCGTTTCGATCTTGCCG-ACGGCTTTCCGCTCGTCACCACCAAGAA 199 Query 45583 GTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGT 45642 | | || || ||||| | | ||||| || ||||| | ||||| | || || Sbjct 200 GGTCCACCTCAAGTCGATAGTCAACGAACTCCTGTGGTTCCTGCGCGGCGACTCCAACGT 259 Query 45643 TCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGA 45702 | |||| ||| | || || | || ||||||||||||||||| || ||||| || Sbjct 260 GGCGTGGCTGCACGAGCACGGCGTCTCCATCTGGGACGAGTGGGCCGACGAGAACGGTGA 319 Query 45703 TCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGG-GAAAACGG 45761 |||||||| ||||||||| || ||||| ||| || || || || Sbjct 320 ACTCGGCCCCGTCTACGGCGTCCAGTGGCGTAGCTGGCCCACCCCTTCGGGCGAGCACA- 378 Query 45762 TCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGC---AACCCGAACTCGCGGCGGT 45818 ||||||| || || | | | || | || |||| ||||| | ||||||||| Sbjct 379 TCGACCAGATCACGCAGACCGTCGAG--ACTCT-GCGCTCCAACCCCGATTCGCGGCGGA 435 Query 45819 TGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATT 45878 | | || ||||||||||| || | | | | ||| || | || || || Sbjct 436 TCATCGTTTCGGCGTGGAACGTCGCCGACATTCCGCAGATGGCCCTGGCGCCGTGCCA-- 493 Query 45879 ACGC---CTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTT 45935 ||| ||| ||||| |||||||| | ||| | | || ||| | | | ||||| Sbjct 494 -CGCTTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTACCAGCGCA 552 Query 45936 CTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATA 45995 | ||| | || || || | ||||| |||||||| ||||| |||||| | || || | Sbjct 553 GCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCCAGCTACGCGCTGCTCACCCACA 612 Query 45996 TGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCC 46055 || | ||||| || || ||||| |||||||| || | | |||||||||||| || Sbjct 613 TGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAGTTCGTCTGGACCGGCGGCGACTGCC 672 Query 46056 ATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGC 46115 | | ||| | ||||| | || || | || |||||| ||||| |||| ||| Sbjct 673 ACATCTACGACAATCACGTCGACCAGGTGACCGAGCAGCTCGGCCGCGAACCGCTGCCGT 732 Query 46116 TGCCGA 46121 |||||| Sbjct 733 TGCCGA 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157724164629570