Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq24 221 3e-53 seq215 152 1e-32 seq2164 89.7 1e-13 seq1 89.7 1e-13 >seq24 Length=857 Score = 221 bits (244), Expect = 3e-53 Identities = 212/271 (78%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36007 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 36066 |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 36067 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA--- 36123 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 36124 GCCACA----TCCATC--------------ATCGCTGACATGCAGAAGCGTCAACGTGAT 36165 |||| | | | | || |||||||||||| ||| || |||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 36166 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36224 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 36225 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36255 ||| |||| || |||| | ||||||||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq215 Length=48791 Score = 152 bits (168), Expect = 1e-32 Identities = 342/504 (68%), Gaps = 10/504 (2%) Strand=Plus/Plus Query 11825 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 11884 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 11885 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 11940 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 11941 ATGCGTCAGAAAACCATCGATGCCATCATGGCGCATGCCGCTGCGGAATACCCGCGAGAG 12000 ||||| || | | ||| | || ||| ||||||||| || ||||| || ||| |||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12001 TGCTGCGGCGTGGTGGCGCAGAAAAGCCGGGTTGAGCGTTATTTCCCCTGCCGCAACCTT 12060 |||||||| || || | | | |||| || || ||||| ||||| ||| | Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCGTGCCGGAACATC 27719 Query 12061 TCTGAAGAGCCGACAGAACATTTTCACCTTTCTCCCGAAGACTACGCAGCTGCCGAAGA- 12119 | ||||||| ||| | |||| ||| ||| || |||||||| || || || || Sbjct 27720 GCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGAC 27779 Query 12120 CTGGGGGACGGTGGTAGCCATTGTTCACAGCCACCCTGACGCGACGACGCAGGCCAGC-G 12178 ||||| || ||| | | ||||||||| ||||| ||||| || | || |||| | Sbjct 27780 CTGGGCGA-AGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCA-GCCGGCCGTCAC 27837 Query 12179 AGCTTGATAAGGCGCAATGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGG 12238 || || ||| || || || || |||||||||| ||| || ||||| | Sbjct 27838 CGCACGACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCCG 27897 Query 12239 AGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTT 12297 |||||||||| || || ||| ||| || | || || ||||||||| |||| |||||| Sbjct 27898 AGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTTT 27956 Query 12298 GTGCTTGGACACTTCGACTGCTGG 12321 || | ||| || ||||||||| Sbjct 27957 GTACATGGCGCCTGGGACTGCTGG 27980 Score = 95.1 bits (104), Expect = 3e-15 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15019 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15078 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15079 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15138 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15139 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15198 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15199 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15258 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15259 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 15310 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 32609 >seq2164 Length=1578 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 20024 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 20075 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 >seq1 Length=7745 Score = 89.7 bits (98), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 20053 TCCTATTATCGGCACCATTTAAATCAATAAGTTACCTAGCATTTAAGTAAACTACGTTCT 20112 ||||||||||| ||||||| ||||||| ||||||| |||||| || || ||||| | Sbjct 205 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 148 Query 20113 CCTCTTGTGCCGTATTTGTGCCATTG 20138 |||| ||||||||||||||||||||| Sbjct 147 CCTCCTGTGCCGTATTTGTGCCATTG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123886593071010