Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq816 392 9e-105 seq179 277 5e-70 seq11777 178 4e-40 seq24 178 4e-40 seq1 104 6e-18 seq2164 89.7 1e-13 >seq816 Length=14434 Score = 392 bits (434), Expect = 9e-105 Identities = 237/250 (95%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 23926 AAAAAACCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 11437 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 11378 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 |||||||||||||||||||||||| | |||||||||||||||||||||| ||| || ||| Sbjct 11377 GTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGTTCTC 11318 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 11317 GGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGTGCAT 11258 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 11257 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCA 11198 Query 24166 GTGCGAGGAT 24175 |||||||||| Sbjct 11197 GTGCGAGGAT 11188 >seq179 Length=18974 Score = 277 bits (306), Expect = 5e-70 Identities = 552/807 (68%), Gaps = 22/807 (3%) Strand=Plus/Plus Query 7608 TTTGACGGGCGCCCTGTTTTTCTTGAAGAGCAGGATCTCCCTGCCGTGGCTGTATACCTT 7667 ||||| || ||||| | | || |||| ||| |||| | || || | || || || || Sbjct 7953 TTTGATGGTCGCCCCGCTGTTTTTGATGAGGCGGATTTTCCGGCAATTGCCGTTTATCTC 8012 Query 7668 TCTGACGCGGAGTACACCGGCGACTCGCTTGACGAAGATTCGTGGCAGGCGGTTGTTCAC 7727 | | ||| || ||||| ||||| ||| ||| ||| | |||||||||| | || Sbjct 8013 ACCGGCGCTGAATACACGGGCGAAGAGCTGGACAGTGATACCTGGCAGGCGGAGCTGCAT 8072 Query 7728 ATCGAGGTATTTCTTAAAGCCTCC--AGC--CCCGACAGCGCGCTTGATTCCTGGATGGA 7783 ||||| || || || |||| | || || || | ||| ||||| |||||||| Sbjct 8073 ATCGAAGTTTTCCT----GCCTGCTCAGGTGCCGGATTCAGAGCTGGATTCGTGGATGGA 8128 Query 7784 AGAGAAAGTGTATCCGGCAATGGCCTTCATCCCGGGTCTGACCGAACTGGTCG--AG-AC 7840 | ||||||| ||| | ||||||| ||| | || || || || | Sbjct 8129 GTCCCGGATTTATCCGGTGATGAGCGATATCCCGGCACTGTCAGATTTGATCACCAGTAT 8188 Query 7841 GTTCACCCCGCAG-GGTTATGACTATCAGCGGGATGATGAAATGGCCACCTGGGGTTCAG 7899 | | || || || |||||||| | ||| || ||||| || | ||| |||| | Sbjct 8189 GGTGGCC----AGTGGCTATGACTACCGGCGCGACGATGATGCGGGCCTGTGGAGTTCTG 8244 Query 7900 TCGATTTCACGTACTTAATCACCTATTCAATTTAAGAGGTACTTATGCCTACTCCAAACC 7959 |||| | ||||| | || |||||| ||| | |||| ||||||| ||||| | Sbjct 8245 CCGATCTGACGTATGTCATTACCTATGAAATGT--GAGGACGATATGCCTGTACCAAATC 8302 Query 7960 CGCTGGCCCCCGTGAAAGGTGCCGGTACCACACTCTGGCTTTACACCGGAACGGGCAACG 8019 | || |||||||||||||| ||||| || ||| |||| | ||| | ||| || Sbjct 8303 CAGCAATACCGGTGAAAGGTGCCGGAACCACCCTGTGGGTTTATAACGGGAGCGGCGACC 8362 Query 8020 CTTTCGCTAACCCACTCTCGGATATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGA 8079 ||| || ||||| || || || | |||||| || ||||| ||| ||||||| |||| Sbjct 8363 CTTATGCGAACCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGA 8422 Query 8080 CGCCGGGCGAAATGACCGCAGAATCGTATGACGACACTTACCTCGACGACGAGGATGCCG 8139 |||| |||||| ||||||| || || |||||||||| ||| ||||| || || ||||| | Sbjct 8423 CGCCCGGCGAACTGACCGCTGAGTCCTATGACGACAGTTATCTCGATGATGAAGATGCGG 8482 Query 8140 ACTGGAACGCGACGGCCCAGGGGGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCT 8199 |||||| |||||| | |||||| ||||| || || |||||| ||||| || || | Sbjct 8483 ACTGGACCGCGACCGGGCAGGGGCAGAAATCCGCCGGAGATACCAGCTTCACGCTGGCGT 8542 Query 8200 GGAAGCCGGGCGAAGAAGGGCAAAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTA- 8258 ||| ||| || || | ||||| | | || | || ||||||| ||| || | | || Sbjct 8543 GGATGCCCGGAGAGCAGGGGCAGCAGGCGCTGCTGGCGTGGTTTAATGAAGG-TGA-TAC 8600 Query 8259 -CGTTATTACAAAATCAAATACCCGAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAG 8317 ||| || |||||| | ||||||||| || ||||| || ||| |||||||| ||| Sbjct 8601 CCGTGCCTATAAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAG 8660 Query 8318 CAGCCTGGGTAAAGCCATTCCGGCAAAAGAGGTCATTACCCGTACAGCGAAAATCACCAA 8377 ||| | ||||| || | |||| || || || || |||||||| | ||| ||||||| Sbjct 8661 CAGTATCGGTAAGGCGGTGACGGCGAAGGAAGTGATCACCCGTACGGTGAAGGTCACCAA 8720 Query 8378 TACCGGCAAGCCGGAACTGGCAGAAGA 8404 | ||| ||| | |||||||||| Sbjct 8721 TGTGGGCCGTCCGTCAATGGCAGAAGA 8747 Score = 134 bits (148), Expect = 4e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || ||| Sbjct 12097 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAA 12156 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| |||||||| || |||||| Sbjct 12157 TTTGTCTTCACAAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTCTACCGGCTGATG 12216 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | |||||| ||||| Sbjct 12217 CGCGGCTATGCCACCGGTGGTTATGTCGG 12245 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 11314 CTGCTGACGCTTCAGGCTGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 11373 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 11374 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 11433 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 11434 GCGGCGCAACGTCGCCAGCTGTCCGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 11493 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 11494 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 11538 Score = 127 bits (140), Expect = 6e-25 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||||||| Sbjct 9433 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGCGAGA 9492 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 9493 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 9552 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 9553 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 9612 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 9613 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 9655 >seq11777 Length=413 Score = 178 bits (196), Expect = 4e-40 Identities = 107/113 (95%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41979 TTTTATGCGCATCGCACGCGCACATCGTAGAAAGTCTTTCAGCTGTGAGCCTGGGCAAAC 42038 || || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 113 TTCTACGCGCATCGCACGCGCACACCGTAGAAAGTCTTTCAGTTGTGAGCCTGGGCAAAC 54 Query 42039 CGTTAACTTTCGGCGGCTTTGCCGTGCGACAGGCTCACGCCTAAAAGGAAATA 42091 |||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 53 CGTTAACTTTCGGCGGCTTTGCTGTGCGACAGGCTCACGTCTAAAAGGAAATA 1 >seq24 Length=857 Score = 178 bits (196), Expect = 4e-40 Identities = 109/116 (94%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40745 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 40804 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 40805 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAA 40860 ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAA 586 >seq1 Length=7745 Score = 104 bits (114), Expect = 6e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 22061 TCCTATTATCGGCACCATTTAAATCAATGAGTTACCTCGCATTTAAGTAAACCACGTTCT 22120 ||||||||||| ||||||| ||||||| |||||||| | |||||| || |||||||| | Sbjct 205 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 148 Query 22121 CCTCTTGTGCCGTATTTGTGCCATTG 22146 |||| ||||||||||||||||||||| Sbjct 147 CCTCCTGTGCCGTATTTGTGCCATTG 122 >seq2164 Length=1578 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 22083 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136751653135020