Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq816 1193 0.0 seq24 260 3e-65 seq215 156 1e-33 >seq816 Length=14434 Score = 1193 bits (1322), Expect = 0.0 Identities = 1232/1602 (77%), Gaps = 14/1602 (1%) Strand=Plus/Minus Query 20475 TTGACAAAAAATTAGCGCAAGAAGACAAAAA--TCACCTTGCGCTAATGCTCTGTCTCAG 20532 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 13012 TTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAG 12953 Query 20533 GTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCA 20592 ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 12952 GTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCA 12893 Query 20593 TTATGTAGTCTATCATTTAACCACAGATT--AGTGTAATGCGATGATTTTTAA-GTGATT 20649 ||||| ||||||| |||| || || | | | ||| || |||| || | || || Sbjct 12892 TTATGCAGTCTATTTTTTAG--ACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTT 12835 Query 20650 AATGTTATTTTGTCATCCTTTAGGTGAATAAGTTGTATATTTAAAATCTCTTTAATTATC 20709 | ||| ||| | ||| | | ||||||| | ||||| | || ||||| Sbjct 12834 ACCGTTTCACATTCAACTTTTTTAT-ACTAAGTTGGCATTATAAAAAAGCATTGCTTATC 12776 Query 20710 AGTAAATT--AATGTAAGTAGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAA 20767 | | || || | | |||||| ||| |||||||||||||||||| | |||||||| Sbjct 12775 AATTTGTTGCAACGAAC--AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 12718 Query 20768 TTTTGTCCCATTCCCGTCCACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTAT 20827 |||||||||| |||| || | | || | |||| | | ||||| | || || |||| Sbjct 12717 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 12658 Query 20828 GCCCGAGAAGACGTTGAGCAAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACA 20887 ||||||||||| |||||||||| ||||||| ||||| ||| || || || || |||| Sbjct 12657 GCCCGAGAAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 12598 Query 20888 GGCTACGCAGTTCATGGAATGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTC 20947 || |||| || || || |||||||| | || || || ||||| || ||||| |||| Sbjct 12597 AACTGCGCAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTC 12538 Query 20948 TCGCCTTTGTAAAATACTTTGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATG 21007 || |||||||| |||||||||| | |||||||| || || | | |||| Sbjct 12537 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATG 12478 Query 21008 CGATTATAGTTTCACTGCTGCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGA 21067 | ||||| ||||| | || || |||||| | ||||| || || ||| | Sbjct 12477 CAATTATGGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATA 12418 Query 21068 TATTGAGCGCGTCAATCGTTAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCT 21127 | ||| || |||| | ||| ||| ||||| | ||| | |||||||| || | Sbjct 12417 TCCCGAGAGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTT 12358 Query 21128 GTTCAATGTGAAGATGGTTGTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTA 21187 | || | | ||||| || || || ||||| |||||| ||| ||||| || | Sbjct 12357 GCTCGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 12298 Query 21188 CTCTCTGCCCTGTAACGACAGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTT 21247 ||| |||||| ||||| ||||||| |||||||| ||||| ||||| ||| | || Sbjct 12297 CTCGCTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATT 12238 Query 21248 CGGCCGCATGGTATATCGCGACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTG 21307 | || || || || || | ||||| | ||| || |||||||| | |||||| |||| Sbjct 12237 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTG 12178 Query 21308 ATTTTGCTGTGCGGGTTGCTGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCT 21367 ||||||| | ||| || |||| ||||| || || | | ||| || || ||||| |||| Sbjct 12177 ATTTTGCAGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCT 12118 Query 21368 CACGAAAAACGTCAACAAGGGTTGACCTGATTAATTTTGCGGAAGCCGATTTGCCTTCTG 21427 | || || | || || ||||| |||||||| || || || |||| ||||| || Sbjct 12117 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 12058 Query 21428 CTACGTAGGTGTTTAGCATTGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGT 21487 ||| ||| || |||||||| || | ||||| || | ||||| | || || | Sbjct 12057 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 11998 Query 21488 CAGGCAATTTTCTTCGGATTGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCC 21547 |||||| || | |||||| | |||||||| ||| | | || || ||| || Sbjct 11997 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 11938 Query 21548 TGATACCCCT-CTCGCTGAGGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATT 21606 |||| || || || || |||||| |||| || || |||||||| | ||| | || | Sbjct 11937 TGATTCCTCTGCTGGCC-AGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACG 11879 Query 21607 GCGTCAGCGCCTTTAATTCTGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCA 21666 | | | | | || ||||| || |||| | || | ||| || || | |||||| Sbjct 11878 GAATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCA 11819 Query 21667 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 21726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11818 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 11759 Query 21727 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 21786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11758 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 11699 Query 21787 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 21846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11698 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 11639 Query 21847 ATCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 21906 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11638 ACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 11579 Query 21907 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 21966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11578 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 11519 Query 21967 AAGGCTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 22026 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 11518 AAGGCTTCTTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 11459 Query 22027 GTCTCCGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22068 |||||||||||||||||||||||||| |||| | | ||||| Sbjct 11458 GTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 11417 >seq24 Length=857 Score = 260 bits (288), Expect = 3e-65 Identities = 222/271 (82%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 34997 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCA 35056 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 35057 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGAGATAAAAAA 35116 |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 35117 GTCAGTGAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCGGAAGCGTCAACGTGAT 35176 | ||| || ||||||| ||||| ||| | || ||||||||| || ||| || |||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 35177 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 35235 || || | ||| || | || |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 35236 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 35266 ||| |||| || |||| | ||||||||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq215 Length=48791 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 12355 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 12414 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12415 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 12470 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12471 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12530 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12531 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12589 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 27718 Query 12590 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12649 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 27719 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 27778 Query 12650 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGC 12707 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 27779 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 27838 Query 12708 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 12767 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 27839 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 27896 Query 12768 GAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12826 ||||||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 27897 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 27955 Query 12827 TGTGCTTGGACACTTCGACTGCTGG 12851 ||| | ||| || ||||||||| Sbjct 27956 TGTACATGGCGCCTGGGACTGCTGG 27980 Score = 96.9 bits (106), Expect = 8e-16 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15459 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15518 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15519 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15578 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15579 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15638 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15639 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15698 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15699 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACATGCC 15749 ||||||| | | || ||| ||||| || || || |||||| |||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120162412540170