Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq24 203 9e-48 seq215 125 2e-24 seq1130 107 5e-19 >seq24 Length=857 Score = 203 bits (224), Expect = 9e-48 Identities = 206/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 38407 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 38466 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 38467 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAGCAGCGCGATAA---- 38522 |||||||||||||||||||||||||||||||| |||||||||| |||||||| || Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 38523 -----------------GGCCACATCCACAATCGCTGACATGCAGAAGCGTCAACGTGAC 38565 ||| | | |||| |||||||||||| ||| || ||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 38566 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 38624 || || | ||| |||| | ||| || |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 38625 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 38655 ||| |||| || |||| | ||||| ||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq215 Length=48791 Score = 125 bits (138), Expect = 2e-24 Identities = 332/503 (66%), Gaps = 8/503 (2%) Strand=Plus/Plus Query 12634 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12693 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12694 AAATAACGAACTCTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-T 12749 | ||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12750 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAG 12809 ||||| || | | ||| | ||||| ||||||||| || || || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12810 TGCTGCGGTGTGGTGGCGCAAAAAAGCCGTGTTGAACGTTATTTTCCTTGCCGGAATCTT 12869 |||||||| || || | | | || | | || || || |||||||| | Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCGTGCCGGAACATC 27719 Query 12870 GCCGCTGCGCCGAAGGAAAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGGAC 12929 ||| | | |||||| ||| | ||| || || || || ||||| || || |||||| Sbjct 27720 GCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGAC 27779 Query 12930 TGGGGTACGGTGATCGCCATCGTTCACAGCCACCCTGACGCCACTACGCAGCCG--AGCG 12987 ||| ||||||| || |||||| ||||| |||||||| | | |||| | || Sbjct 27780 CTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCG 27839 Query 12988 AACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATCGTGAGCTGGCCCG 13047 || || || ||||| || || || |||||||| || || ||||||| Sbjct 27840 CAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCCG 27897 Query 13048 AGGGGGATTTACGTACCATTCAGCCGCGTGGTGAGTTGCCACTGCTGGAGCGTCCGTTTG 13107 |||||||||| || || || ||| || ||||||||| |||| ||||||| Sbjct 27898 AGGGGGATTTGCGGACGATCACGCCAACGGGCAGCACGCCACTGCTCAAGCGGCCGTTTG 27957 Query 13108 TGCTTGGACACTTCGACTGCTGG 13130 | | ||| || ||||||||| Sbjct 27958 TACATGGCGCCTGGGACTGCTGG 27980 Score = 113 bits (124), Expect = 1e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40460 CTGCTGACATTCTGCGTTCTGGTGCTGAAGAATGGCTTTACGGTCACCGGGGAAAGCGCC 40519 ||| |||| ||||| || ||||| ||| || || || || |||||||| || ||||| Sbjct 17416 CTGTTGACCTTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCA 17475 Query 40520 TGCGCCAGCCCAGAGAACTTCGATGAAGAAATCGGGCGCAAGATTGCTCGCCAGAATGCT 40579 |||||||| || ||||||||||| | ||| | || ||||||||||| |||||||| || Sbjct 17476 TGCGCCAGTCCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCC 17535 Query 40580 GTAAACAAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 40621 | | | || |||||| ||| || ||| ||| |||||| Sbjct 17536 GAACAGAAGATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 17577 Score = 102 bits (112), Expect = 2e-17 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15738 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15797 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15798 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15857 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15858 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15917 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15918 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15977 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15978 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16028 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 >seq1130 Length=54118 Score = 107 bits (118), Expect = 5e-19 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 40460 CTGCTGACATTCTGCGTTCTGGTGCTGAAGAATGGCTTTACGGTCACCGGGGAAAGCGCC 40519 |||||||| || ||||| ||| | ||| || ||||| ||||| ||||| || |||||| Sbjct 31177 CTGCTGACTTTTTGCGTGCTGATTCTGCGCAACGGCTTCACGGTGACCGGCGAGAGCGCC 31236 Query 40520 TGCGCCAGCCCAGAGAACTTCGATGAAGAAATCGGGCGCAAGATTGCTCGCCAGAATGCT 40579 |||||||| || || |||||||||| |||||||| || || | || || |||||| Sbjct 31237 TGCGCCAGTCCGGAAAACTTCGATGCCGAAATCGGCCGGAAAGTCGCGCGTGCGAATGCG 31296 Query 40580 GTAAACAAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAGAAGC 40625 | | | ||||||||| || ||||| || |||||| ||||| Sbjct 31297 GAACAGAAAATCTGGCAACTGGAAGGCTATCGCCTGAAG--GAAGC 31340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132870698681490