Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq816 2044 0.0 seq24 217 4e-52 seq215 156 1e-33 >seq816 Length=14434 Score = 2044 bits (2266), Expect = 0.0 Identities = 1305/1411 (92%), Gaps = 9/1411 (1%) Strand=Plus/Minus Query 32636 ACACAAAAGACA--CTAATACaaaagaaaaaagaaaaGATTATTCGTCAGAGAATTCTGG 32693 |||||||||||| |||| ||||||| || | |||| || |||||| |||||||||| Sbjct 3701 ACACAAAAGACAAACTAA--CAAAAGACAATATAAAACCTTTTTCGTCCGAGAATTCTGA 3644 Query 32694 CGAATCCTCTGACCAGCCAGAAAACGATCTTTCTGTGGTTAAACCGGATGCTGCAATTCA 32753 ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| Sbjct 3643 CGAATCCTCTGACCAGCCAGAAAACGATCTTCCTGTGATGAAACCGGATGCTGCAATTCA 3584 Query 32754 GAGCGGCAGCAAGTGGGGAACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACAT 32813 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3583 GAGCGGCAGCAAGTGGGGGACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACAT 3524 Query 32814 GGTGAAGACTATCGCACCATCAGCCAGAAAACCGAATTTTGCTGGGTGGGCTAACGATAT 32873 ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 3523 GGTGAAGACCATCGCGCCATCAGCCAGAAAACCGAATTTTGCAGGGTGGGCTAACGATAT 3464 Query 32874 CCGCCTGATGCGTGAACGTGACGGACGTAACCATCGCGACATGTGTGTACTGTTCCGCTG 32933 ||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 3463 CCGCCTGATGCGTGAACGTGATGGACGTAACCACCGCGACATGTGCGTGCTGTTCCGCTG 3404 Query 32934 GGCATGCCAGGACAACTTCTGGTCCGGTAACGTTCTTAGCCCGGCCAAACTCCGCGACAA 32993 ||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct 3403 GGCATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGTCCGGCTAAACTCCGCGACAA 3344 Query 32994 GTGGACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCAGTCGTGACAGCCAGCAAACC 33053 ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| Sbjct 3343 GTGGACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCTGGCGTGACAGCCAGAAAACC 3284 Query 33054 AAAACTCGACCTGACAAACACAGACTGGATTTACGGGGTGGATCTATGAAAAACATCGCC 33113 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 3283 AAAACTCGACCTGACAAACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCC 3224 Query 33114 GCACAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAA 33173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3223 GCACAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAA 3164 Query 33174 CAGTACGACGAAAAGCCGCAGGTACAGCAGGTAGCGCAGATCATCAACGGTGTGTTCAGC 33233 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3163 CAGTACGACGAAAAGCCGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGC 3104 Query 33234 CAGTTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAACGAACTGAACGAA 33293 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3103 CAGTTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAA 3044 Query 33294 ATCCGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTT 33353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3043 ATCCGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTT 2984 Query 33354 AACGCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTTCTGCCATCACCCGGGCAG 33413 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2983 AACGCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAG 2924 Query 33414 TTTGTTGCATGGTGCCGGGAAGAAGCATCCGTTATCGCCGGACTGCCAAACGTCAGCGAG 33473 ||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 2923 TTTGTCGCCTGGTGCCGGGAAGAAGCATCCGTTAACGCCGGGCTGCCAAACGTCAGCGAG 2864 Query 33474 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGAGGCCTGTATCCGGATGCGGAGTCT 33533 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 2863 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCT 2804 Query 33534 TATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGG 33593 |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 2803 TATCCGTGGAAATCGAACGCGCATTACTGGCTGGTTACCAACCTGTACCAGAACATGCGG 2744 Query 33594 GCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGCTTGTCCA-TAT 33652 ||||||||||||||||||||||||||||| || ||||| || ||||| || |||| ||| Sbjct 2743 GCCAATGCGCTTACTGATGCGGAATTACGGCGCAAGGCTGCCGATGAACT-GTCCTGTAT 2685 Query 33653 GACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCAT 33712 ||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 2684 GACCGCGCGAATTAACCGTGGTGAGGCGATACCTGAACCAGTAAAACAGCTTCCTGTCAT 2625 Query 33713 GGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAA 33772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2624 GGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAA 2565 Query 33773 GTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGG 33832 ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2564 GTTTGGGCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTTATTACCTGGGG 2505 Query 33833 ACGCATAATAGCTTCTGTGCGCCGGACGTTGCCGCGCTAACAGGCGCAACAGTAACCAGC 33892 |||||||| || |||||||||| ||||||||| ||| |||||| | ||||||||| || Sbjct 2504 ACGCATAAGAGTTTCTGTGCGCAGGACGTTGCTGCGGCAACAGGTGTGACAGTAACCTGC 2445 Query 33893 ATAAATCAGGCCGCGGCTAAAATGGCACGGGCAGGTCTTCTGGTTATCGAAGGTAAGGTC 33952 ||||||||||| || ||||||||||| || ||||| | ||||| || || ||||||||| Sbjct 2444 ATAAATCAGGCAGCAGCTAAAATGGCGCGTGCAGGAATCCTGGTCATTGATGGTAAGGTC 2385 Query 33953 TGGCGAACGGTGTATTACCGGTTTGCTACCAGGGAAGA-ACGGGAAGGAAAGATGAGCAC 34011 ||||||||| | ||| ||||| ||||| ||| || | || || ||| |||| | Sbjct 2384 TGGCGAACGTTTGTTTAACGGTTAGCTACTCAGGATGATAGGGCGCGGCAAG-TGAGTAT 2326 Query 34012 GAACCTGGTTTTTAAGGAGTGTCGCCAGAGT 34042 ||| | || |||| |||| || | |||||| Sbjct 2325 GAAGC-GGATTTTCAGGAATGCCATCAGAGT 2296 Score = 412 bits (456), Expect = 9e-111 Identities = 246/258 (95%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 22734 CAGGCAAAAAGAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22793 || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11445 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 11386 Query 22794 TTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTG 22853 |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || Sbjct 11385 TTGGTTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTG 11326 Query 22854 ATGTTCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCACCTGTGACTCGG 22913 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 11325 ATGTTCTCGGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGG 11266 Query 22914 AAGTGCATTTATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAAT 22973 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 11265 AAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAAT 11206 Query 22974 CCCCGAGAGTGCGAGGAT 22991 || || ||||||||||| Sbjct 11205 CCTCGTCAGTGCGAGGAT 11188 >seq24 Length=857 Score = 217 bits (240), Expect = 4e-52 Identities = 211/271 (78%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 38854 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 38913 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 38914 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGATAAA--- 38970 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 38971 GCCA---------------CGTAC---ATCATCGCTGACATGCAGAAGCGTCAACGTGAT 39012 |||| || || || |||||||||||| ||| || |||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 39013 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 39071 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 39072 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 39102 ||| |||| || |||| | ||||| ||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq215 Length=48791 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 11918 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 11977 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 11978 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 12033 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12034 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12093 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12094 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12152 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 27718 Query 12153 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12212 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 27719 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 27778 Query 12213 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGC 12270 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 27779 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 27838 Query 12271 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 12330 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 27839 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 27896 Query 12331 GAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12389 ||||||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 27897 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 27955 Query 12390 TGTGCTTGGACACTTCGACTGCTGG 12414 ||| | ||| || ||||||||| Sbjct 27956 TGTACATGGCGCCTGGGACTGCTGG 27980 Score = 95.1 bits (104), Expect = 3e-15 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15115 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15174 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15175 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15234 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15235 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15294 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15295 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15354 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15355 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 15406 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 32609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130128754768320