Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq400 327 3e-85 seq11777 165 2e-36 seq1656 138 3e-28 seq215 132 1e-26 >seq400 Length=38681 Score = 327 bits (362), Expect = 3e-85 Identities = 401/545 (74%), Gaps = 2/545 (0%) Strand=Plus/Plus Query 35177 CGCGCTGGTTTCAGCCAGTCACCGATGCGATGAAAGAATTCGGCATT-ACCAAGCCGGTA 35235 ||||||||| || || |||||| || |||||||| || ||||| | ||| ||| | Sbjct 32524 CGCGCTGGTATCTGCATATCACCGCGGCAATGAAAGAGTTTGGCATCGAACAA-CCGCTG 32582 Query 35236 GACCAGGCCATGTTCATTGCGCAGGTTGGGCATGAATCAGCTGGCTTCACTCTCCTGGTG 35295 ||||||| ||||| || |||||||| |||||||| || | ||||| || | ||| | Sbjct 32583 CACCAGGCGATGTTTATCGCGCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAG 32642 Query 35296 GAGAGCTTCAATTACCGGATTGCCGCACTAGTTAACTTCATTCGTGCAGGACGCCTTACC 35355 || | |||||| ||| | | || | || | ||| | ||| | || ||||| || Sbjct 32643 GAAAACTTCAACTACAGCGTAGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACT 32702 Query 35356 GCAGAACAGGCAAACGCGTTAGGCCGCCGCCCTGAAGAACGGACATTACCGATTGAGCGC 35415 | ||||| |||||| | ||||| || ||| |||| | |||||| | |||||| Sbjct 32703 CAGGGTCAGGCTAACGCGCTGGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGC 32762 Query 35416 CAGCGAGCCATTGCGAACCTGGTATACAGCAAACGCATGGGTAACAACGCACCCGGCGAC 35475 ||||| || || || |||||||| ||||||||| | ||||| ||||||| || ||| Sbjct 32763 CAGCGTGCGATCGCCAACCTGGTGTACAGCAAAAGAATGGGGAACAACGGTCCGACTGAC 32822 Query 35476 GGCTGGTTATACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAACAACTACCGTGAT 35535 |||||||| |||| ||||| |||||||||||||| ||||| || |||||||| || || Sbjct 32823 GGCTGGTTTTACCTCGGGCGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGAC 32882 Query 35536 TGTGGAAACGGCCTGAAAGTTGATCTGGTTAAGCAACCTCAGTTGCTCGCTGAAGACGTA 35595 || || || |||||||| || |||||||||||||| ||| || |||| || | |||| | Sbjct 32883 TGCGGCAATGGCCTGAAGGTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAA 32942 Query 35596 TACGCGGCAAGAAGTGCGGCATGGTTCTTTGTCACTAAGGGCTGCCTTAATCATTCTGGC 35655 |||||||| | || ||||| |||||||| | || || |||||| | || | | ||| Sbjct 32943 TACGCGGCCCGCAGCGCGGCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGC 33002 Query 35656 GACCTGATGCGCGTGACGAAGATTATCAACGGCGGAACGAACGGACTGGAAGATCGTCGC 35715 |||||| ||||||| ||| |||| ||||| || || |||||| | || || || || Sbjct 33003 GACCTGGTGCGCGTCACGCAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGT 33062 Query 35716 GCTCG 35720 || || Sbjct 33063 GCGCG 33067 Score = 223 bits (246), Expect = 9e-54 Identities = 189/233 (81%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 23050 ACCGGCATCGGCACTCGGATAACCAGCTTTTTGAGTCTGTCTATCTCAGCTGCGTGCTCC 23109 |||||||||||||| |||||||||||| | |||| | |||| ||| |||| |||||| Sbjct 5904 ACCGGCATCGGCACGCGGATAACCAGCCTGCGGAGTTCGGCTATTTCATCTGCCTGCTCC 5845 Query 23110 AGCGCGATATCCTTCCAGTCCTGCGCTTCGGCCATCCACCAGGCTACATCTGCTTTAAGG 23169 | | | | | | |||| ||||| | ||||||| || || || ||||||||| Sbjct 5844 ATGACTCTGGCGTACAGGTCCGAGGCTTCACCTTTCCACCATGCCACGTCGGCTTTAAGG 5785 Query 23170 CGGCGCAAGCGCCGCTGTTTGAGTTTGCTCACCATGGCAGCCACCCAAGTTGCTGCAGGG 23229 ||||||| |||||||||||| ||||||||||||||||||||||||| | |||||| || | Sbjct 5784 CGGCGCAGGCGCCGCTGTTTAAGTTTGCTCACCATGGCAGCCACCCCATTTGCTGAAGTG 5725 Query 23230 CACCGATTGCCAGCAGCACGAACATAATCGCGTCGAATGGGTTAGGCATGGCG 23282 | ||||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct 5724 CGCCGATTGCCAGCAGCACGAACATCACCACGTCGAATGGGTTAGGCATGTCG 5672 Score = 150 bits (166), Expect = 5e-32 Identities = 137/170 (81%), Gaps = 11/170 (6%) Strand=Plus/Plus Query 27663 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGCTGGTGAAGCGTC---TCTGGCT 27719 ||||||||||||||||||||||||||||||||||||| |||||| |||| || || Sbjct 9884 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGATGGTGAGTCGTCATGTCGTGCA 9943 Query 27720 GTCGTACACAACTGTCTTGCACATTCCGGCTACCCGCT----GGATCTGGATACTGAAAG 27775 | | | || | ||||||||||||||||||||||| |||| ||| || ||| Sbjct 9944 TACCGATAACACAGACTTGCACATTCCGGCTACCCGCTCAGGGGATAAGGAAAC--CAAG 10001 Query 27776 GAATCC--ACGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTTAC 27823 ||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 10002 GAACCCCGCCGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTCAC 10051 Score = 111 bits (122), Expect = 4e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24797 TCCAGCTCAGCAATCCGCTTCTCTGCGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTT 24856 |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 4510 TCCAGCTCAGCAATCCTCTGGTCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTG 4451 Query 24857 GCGGGGTTGGCTGCGGCAATAAAT 24880 ||||| ||||||||||| ||| || Sbjct 4450 GCGGGTTTGGCTGCGGCGATATAT 4427 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 24048 TCGGGCAACTTGTAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 24099 ||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5134 TCGCGCAACTTGCAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 5083 >seq11777 Length=413 Score = 165 bits (182), Expect = 2e-36 Identities = 103/111 (93%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 36608 TTTTATGCGCATCGCACGCGCACAACTAAGAAAGTCTTTCAGCTGTGAGCCTGGGCAAAC 36667 || || |||||||||||||||||| | |||||||||||||| ||||||||||||||||| Sbjct 113 TTCTACGCGCATCGCACGCGCACACCGTAGAAAGTCTTTCAGTTGTGAGCCTGGGCAAAC 54 Query 36668 CGTTAACTTTCGGCGGCTTTGCCGTGCGACAGGCTCACGCCTAAAAGGAAA 36718 |||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 53 CGTTAACTTTCGGCGGCTTTGCTGTGCGACAGGCTCACGTCTAAAAGGAAA 3 >seq1656 Length=3181 Score = 138 bits (152), Expect = 3e-28 Identities = 107/123 (87%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 21482 ATTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGGTACCATGGG 21541 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 639 ATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATGGG 698 Query 21542 AAA-ACTAGAATAAAATCAATG--ATAAGCAGTGTCGTATAAACCACCGAAAGGTGGttt 21598 ||| | ||||| |||||| | |||||||||||||| |||||||| |||||||| Sbjct 699 AAACATCAGAAT--AATCAAAGCAATAAGCAGTGTCGT-GAAACCACCTTCGGGTGGTTT 755 Query 21599 ttt 21601 ||| Sbjct 756 TTT 758 >seq215 Length=48791 Score = 132 bits (146), Expect = 1e-26 Identities = 339/506 (67%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 12194 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 12253 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || ||||| || Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12254 AAATAACGAGCTCTCGTTTGGTGGGTTCCCTGGCACGTCTTTGAT---CAGGAGCTGAT- 12309 | ||||| ||||| || || || ||||| | | ||| |||| | |||||||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12310 ATGCGGCAGAAAACCATTGATGCCATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12369 ||||| || | | ||||| || || ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12370 TGCTGCGGCGTGGTG-GCGCAGAAAAGC-CGTGTTGAACGTTATTTCCCGTGCCGCAATC 12427 |||||||| || || || | | || | | ||| || ||||||||||| || Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAA--GTACTTCCCGTGCCGGAACA 27717 Query 12428 TTGCCACGGAACCGGAGGACAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGG 12487 | |||||||| ||| | || | ||| || || || || ||||| || || |||| Sbjct 27718 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 27777 Query 12488 ACTGGGGCACGGTGATCGCCATCGCTCACAGTCACCCTGATGCCACGACACAGCCG--AG 12545 || |||| ||||||| || | |||| ||||| || ||||| | | |||| | Sbjct 27778 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 27837 Query 12546 CGAACTGGATAAAGCGCAATGCGATGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCC 12605 || || || || ||||| || || || |||||||| ||| || ||||| Sbjct 27838 CGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCC 27895 Query 12606 GGAGGGTGATTTACGCACCATCCAGCC-GCGTGGAGAACTGCCGTTGCTGGAGCGTCCGT 12664 ||||| ||||| || || ||| ||| || | || || ||| |||| |||| |||| Sbjct 27896 CGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGT 27954 Query 12665 TTGTGCTTGGACACTTCGACTGCTGG 12690 |||| | ||| || ||||||||| Sbjct 27955 TTGTACATGGCGCCTGGGACTGCTGG 27980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127949917189710