Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq816 3061 0.0 seq215 141 2e-29 seq24 89.7 1e-13 >seq816 Length=14434 Score = 3061 bits (3394), Expect = 0.0 Identities = 1768/1814 (97%), Gaps = 1/1814 (0%) Strand=Plus/Minus Query 21215 GTTTGATGACAAAAAATTAGCGCAAGAGGACAACAAA-TCACCTTGCGCTAATGCTCTGC 21273 || || ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct 13017 GTGTGTTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGT 12958 Query 21274 TACAGGTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTG 21333 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 12957 TACAGGTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTG 12898 Query 21334 TCGCATTATGTAGTCTATTTTTTAGACTAAATATATTGTAATGCATTGATATTAATGGTT 21393 | |||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||| ||| Sbjct 12897 TAGCATTATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTT 12838 Query 21394 TTTAATGTTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTA 21453 |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 12837 TTTACCGTTTCACATTCAACTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTA 12778 Query 21454 TCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 21513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12777 TCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 12718 Query 21514 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 21573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12717 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 12658 Query 21574 GCCCGAGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 21633 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 12657 GCCCGAGAAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 12598 Query 21634 AACTGCGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTC 21693 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 12597 AACTGCGCAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTC 12538 Query 21694 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATG 21753 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 12537 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATG 12478 Query 21754 CAATTATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATA 21813 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 12477 CAATTATGGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATA 12418 Query 21814 TCCCGAGAGCATCAACATGCAATGTTGTAGGTATGGCAATTTTTACGCCTGTTTTGCTTT 21873 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 12417 TCCCGAGAGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTT 12358 Query 21874 GCTCGACATAAAGATAGCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 21933 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 12357 GCTCGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 12298 Query 21934 CTCGTTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATT 21993 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 12297 CTCGCTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATT 12238 Query 21994 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCTGTAAGTCTTGATCTCCTTACCTCTG 22053 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 12237 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTG 12178 Query 22054 ATTTTGCTGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCT 22113 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 12177 ATTTTGCAGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCT 12118 Query 22114 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 22173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12117 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 12058 Query 22174 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 22233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12057 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 11998 Query 22234 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 22293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11997 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 11938 Query 22294 TGATTCCTCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGG 22353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11937 TGATTCCTCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGG 11878 Query 22354 AATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGCCCTGAAAATAACTCAA 22413 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 11877 AATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAA 11818 Query 22414 TGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTT 22473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11817 TGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTT 11758 Query 22474 TACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGATTAGGGG 22533 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 11757 TACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGG 11698 Query 22534 GTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTA 22593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11697 GTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTA 11638 Query 22594 CCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTT 22653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11637 CCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTT 11578 Query 22654 CCATCCTTAACCGGAGGTGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCA 22713 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 11577 CCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCA 11518 Query 22714 AGGCTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAG 22773 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 11517 AGGCTTCTTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAG 11458 Query 22774 TCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGTTTGGTGTTCTTTCAGTTCT 22833 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 11457 TCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCT 11398 Query 22834 TCAATTCGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCA 22893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11397 TCAATTCGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCA 11338 Query 22894 TAGCAGTCGTTGATGTCCTCTGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCA 22953 ||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 11337 TAGCAGTCGCTGATGTTCTCGGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCA 11278 Query 22954 CCTGTGACTCGGAAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCA 23013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11277 CCTGTGACTCGGAAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCA 11218 Query 23014 GATAAAAGAAACCC 23027 ||||||||||| || Sbjct 11217 GATAAAAGAAATCC 11204 >seq215 Length=48791 Score = 141 bits (156), Expect = 2e-29 Identities = 342/510 (67%), Gaps = 22/510 (4%) Strand=Plus/Plus Query 12633 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12692 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12693 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12748 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12749 ATGCGTCAGAAAACCGTCGATGAGATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12808 ||||| || | | | | | | ||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12809 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCGT-GTTGAACGTTATTTCCCGTGCCGGAATC 12866 || ||||| || || | | | | || | | ||| || |||||||||||||| Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 27717 Query 12867 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCGGAAGATTACGCAGCTGCTGAGG 12926 | ||| ||| |||| | || | ||| ||| || || || ||||| || || |||| Sbjct 27718 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 27777 Query 12927 ACTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAA------CGCAAC 12980 || ||| ||||||| || |||||| ||||| |||||||| | || || Sbjct 27778 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 27837 Query 12981 CGAGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCACATCGTGAGCT 13040 || ||| ||| || ||||| || || || ||||||||||| || | Sbjct 27838 CGCACGACCTG------GCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGT 27891 Query 13041 GGCCTGAGGGGGATTTGCGCACCATCCAGCC-GCGTGGGGAACTGCCGCTGCTGGAGCGT 13099 |||| |||||||||||||| || ||| ||| || | | || ||| ||||| |||| Sbjct 27892 GGCCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGG 27950 Query 13100 CCGTTTGTGCTTGGCCACTTCGACTGCTGG 13129 |||||||| | |||| || ||||||||| Sbjct 27951 CCGTTTGTACATGGCGCCTGGGACTGCTGG 27980 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15737 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15796 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15797 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15856 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15857 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15916 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15917 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15976 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 15977 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTACC 16027 ||||||| | | || ||| ||||| || || || |||||||| || Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 >seq24 Length=857 Score = 89.7 bits (98), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39169 TGGTCAGCTAATCATTACCACAATAAAGCCATTGAATACAAAAAACAGCGCGACGAAAAC 39228 ||| | | ||||||||||| |||| |||||| |||||| ||||||||| |||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 39229 GCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATGCAGAAGCGTCAACGTGAC 39288 || | | | | | ||| | ||| | || |||| ||||||| ||| || ||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 39289 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 39347 || || | ||| |||| | ||| || |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 39348 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 39378 ||| |||| || |||| | ||||||||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132553951368300