Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq737 158 5e-34 seq685 102 3e-17 seq654 84.2 9e-12 >seq737 Length=22238 Score = 158 bits (174), Expect = 5e-34 Identities = 231/327 (71%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 9695 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCG 9754 ||||||||| ||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct 8033 CATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCG 8092 Query 9755 CTATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAA 9814 ||| | || ||||||||||| ||| |||||||| | | || || | | | || Sbjct 8093 CTACATGCCTAGCGGCGACGCGATCGCCAACATCGCCGTGGCCACTTCGTACAAGTCGAA 8152 Query 9815 GGACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGG 9874 |||| || ||||| |||||| |||| ||||||||||| | | |||||||| Sbjct 8153 GGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGCACCGTATTTCGTTCTTCGG 8212 Query 9875 CCGCCTCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGG 9934 |||||| || || ||||||| | || ||||| || || | || |||||| |||| || Sbjct 8213 CCGCCTGGCGGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGG 8272 Query 9935 GCGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGAT 9994 || | |||| || || | ||| | |||| || ||| | ||||| || Sbjct 8273 CCGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACAT 8332 Query 9995 CGTCGCCGACAAGATGCAGATGCTCGG 10021 | |||| || ||||||| ||||| || Sbjct 8333 CATCGCGGAACAGATGCAAATGCTGGG 8359 >seq685 Length=77197 Score = 102 bits (112), Expect = 3e-17 Identities = 214/311 (69%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 |||||||||||| || ||||||||||| ||| | |||||||||| |||||| ||| Sbjct 10559 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 10618 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAGGACAAAGC 9823 || |||| |||| | | ||||| ||| || || | ||| | | || || || Sbjct 10619 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 10678 Query 9824 CAGCGGCGACTTCA-AAGAAGTG-ACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTC 9881 | |||| | || || || | ||||||||||||||||| | ||||||||| || Sbjct 10679 GACCGGC--CAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATC 10736 Query 9882 GCCGAGATCGTCGACGAGCACCTGCG-CAAGGGCGCATCGGT-CTACATCGAGGGGCGCA 9939 ||||| |||| | ||| | ||||| ||||| || | || |||| |||| || Sbjct 10737 GCCGAAATCGCGGGTGAGTATCTGCGAAAAGGGAGC--CAGTGCTACGTCGAAGGCACTC 10794 Query 9940 TCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTCG 9999 || || || |||| ||| || ||| | | |||||||| ||||||||||||| Sbjct 10795 TCCGCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCG 10851 Query 10000 CCGACAAGATG 10010 |||| || || Sbjct 10852 TCGACCAGGTG 10862 >seq654 Length=62735 Score = 84.2 bits (92), Expect = 9e-12 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 7809 ATGGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCG-ACGGTAACCCG 7867 |||||| ||||||||||||| |||||||| || | |||||| |||| ||| ||| || Sbjct 52119 ATGGAGAGGTGGCAGAGTGGTCGAATGTACTTGACTCGAAATCAAGCGTACGTTAAATCG 52178 Query 7868 T-CCGTGAGTTCGAATCTCACCGCCTCCGCCAG 7899 | ||||| ||||||||| |||| ||||||||| Sbjct 52179 TACCGTGGGTTCGAATCCCACCCTCTCCGCCAG 52211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201287237233965