Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq400 370 3e-98 seq60 187 7e-43 seq215 86.0 2e-12 >seq400 Length=38681 Score = 370 bits (410), Expect = 3e-98 Identities = 527/736 (72%), Gaps = 13/736 (2%) Strand=Plus/Plus Query 769 TGGCAGGCTGACGCATTCAAGGAGATCCGCGATCACCTACGCAGT----GAAAACAGGTT 824 |||||||| ||||||||| ||||| ||||||||||| |||| | || || Sbjct 7762 TGGCAGGCAGACGCATTCCGCGAGATACGCGATCACCT--GCAGAACCCGGCGACGCGTC 7819 Query 825 TG-AGCCATTGCTGCTCGCCAGGGCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCA 883 |||| ||| |||| ||| | ||||| |||||||| |||||||| || || |||||| Sbjct 7820 ACCAGCCGTTGATGCTGGCCCGCGCATCCGGCCACGGCATCGGCAAGTCAGCTTTCATCT 7879 Query 884 GCATGCTCATCGACTGGGCAGAGAGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCA 943 ||||| || |||||| | || || ||| | || || ||||| |||| Sbjct 7880 CGATGCTGATTAACTGGGGCATGTCGACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCA 7939 Query 944 ACACCGAAACACAGCTGCGCACCAAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCA 1003 ||||||| | ||||||||||||||||| |||||||| || ||||||| || || Sbjct 7940 ACACCGACAACCAGCTGCGCACCAAGACATGGCCGGAAATCATCAAATGGT--CGAATCT 7997 Query 1004 GCCTGTTCTCGCAC---TGGTTCAAGACCACGGCCACATCGATCGTTTCCCTCGACCCCA 1060 | || | | || | ||||||| ||| ||||| |||| | ||||| Sbjct 7998 GGCTAT-CACGAAAGAGTGGTTCACCTGCACCGCCACGGCGATGTACAGCAATGACCCAG 8056 Query 1061 AACACTCCGCATCCTGGCGCGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCAT 1120 ||| | |||||| || ||||| | || ||||| || |||||| ||||| | Sbjct 8057 GCCACGACAAGCGCTGGCGAGCTGACGCAATACCGTGGTCTGAGCACAACACAGAGGCGT 8116 Query 1121 TCGCCGGCCTGCACAACGAGGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACA 1180 ||||||| |||||||||||| | ||||| |||||| || | |||||||| || || |||| Sbjct 8117 TCGCCGGGCTGCACAACGAGCGTAAGCGTATCATCGTGGTATTCGATGAAGCGTCCAACA 8176 Query 1181 TCAGCGACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCA 1240 | || |||||||||||| ||||| ||||||||||| ||||| |||| || || | Sbjct 8177 TTGCAGATCTGGTGTGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTA 8236 Query 1241 TATGGGTGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCA 1300 | |||||||| || || ||||||||||| ||||| || || |||||||| |||||||||| Sbjct 8237 TCTGGGTGGCGTTTGGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCA 8296 Query 1301 AGTTCAAGCACCGGTGGAAGTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACA 1360 ||| ||||||||| ||||||||| |||||| || | | || || |||||||| |||| Sbjct 8297 AGTACAAGCACCGCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACAAACA 8356 Query 1361 AGACCCAGCACCAGAAGTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCC 1420 || |||| ||||| ||| |||| |||| || ||||| ||||||||| |||| Sbjct 8357 AGCAGCAGCTGCAGAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCC 8416 Query 1421 GTGTGCGCGGCATGTTCCCGAGGGCTTCCGCATTGCAGCTGATACCAACTGACTGGGTGG 1480 | ||||| || || ||||| || || | | | ||| | || ||||| | | | Sbjct 8417 GCGTGCGGGGGATCTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAG 8476 Query 1481 CCGAGGCCATGAAGCG 1496 ||||||||||||||| Sbjct 8477 ACGAGGCCATGAAGCG 8492 Score = 95.1 bits (104), Expect = 3e-15 Identities = 176/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 6144 AACGTGATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGG 6203 ||| | ||||||||||||||||||||||| || ||| | || ||||||||| | | ||| Sbjct 13742 AACATTATCGACGCTGGCGGTACCGGCACTGATAACACCTCTATCTGGCTGGTGGTATGG 13801 Query 6204 GGCGCCAACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCT---GATCCAC 6260 || | |||||| | || ||||||| ||||||||| | | || ||||| || || Sbjct 13802 GGTGAAAACACCGTTCATGGCATCTTCCCGAAAGGGCAGAAAGCTGGCCTACAGACTCAG 13861 Query 6261 AACGACCTAGGCGAGATTGACGCGTTCGATGCCAG-CATG--AACCGCTTCCGCGCCTAC 6317 | |||| || ||| | | |||||||||| || || | || | ||| Sbjct 13862 A---ACCTTGGTGAGCAAACCCTGGTCGATGCCAGTGGTGGTAA---ATACCAGGGCTAT 13915 Query 6318 GGCGACCAGTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGT 6377 | ||| ||| ||||| | |||| | || ||| ||||||||||||| || || Sbjct 13916 CGTACCCATTACAAATGGGATAACGGTCTGGCACTGCGTGACTGGCGCTACGTTGTGCGC 13975 Query 6378 ATCGCAAACATCGA 6391 ||||| |||||||| Sbjct 13976 ATCGCCAACATCGA 13989 >seq60 Length=244765 Score = 187 bits (206), Expect = 7e-43 Identities = 316/451 (70%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 31512 GGTGGTGATGTTCAGCAGGGCGCACATGACGTAGCGCTTGCCGTAGCTGGTGGTCGAGCC 31571 ||| |||||||||||||| || ||||| |||||||||||||| ||| | || | ||||| Sbjct 238549 GGTCGTGATGTTCAGCAGCGCACACATCACGTAGCGCTTGCCATAGGTAGTCGATGAGCC 238608 Query 31572 GACGGCCTGGACGGCGTTCTTGCTGCCGCT---GGTGTCGAGCGGGAGAAGCATGGTTGT 31628 || ||||| ||| |||| || || | | | || | ||| || |||||| || Sbjct 238609 AACAGCCTGTACGTCGTT---GCGACCTTTTCCGATATCAATCGGCAGGCTCATGGTGGT 238665 Query 31629 CTCTTCCCGGTGGCCGGCGCGGTGCATCAGGATGCCAGTCACGCTAAGCCCGGCCTGGGC 31688 | || |||||||| | |||||||||| ||| ||||| || || | | | | || Sbjct 238666 TTGCTCGCGGTGGCCACCCCGGTGCATCAAGATTCCAGTGACACTGATCGCCTTTTCAGC 238725 Query 31689 GTGCTCGACCTTGAAGCTGATGGCGAACCCGTGGGCCTTCATGATCGGCTTCACCACGTC 31748 || || ||||||||| ||||||| |||||||| || |||||||||||||| || Sbjct 238726 GTTTTCCACCTTGAAGGTGATGGCAAACCCGTGCTGCTGCATGATCGGCTTCAAGGTGTG 238785 Query 31749 GCTGATGTCTTCAAGAGTTGCGTAACGGATGGTGCC---GTGACCCTT---GGCGCGCTC 31802 |||||| || || || ||||| ||| | | || ||| || ||| | || Sbjct 238786 TGTGATGTGGTCGAGCGTGGCGTA--GGA-GTTTCCTGTGTGTAGGTTAACGGCACCTTC 238842 Query 31803 TGCGATGGTTGGGATCTCGCACTGCATTTCGGCCATGGCGGCGTTGAACTGTTCTTGGGC 31862 | || ||||| | |||||||||||||||||| ||||| ||||| || | || Sbjct 238843 GAACACAGTCGGGATGTTGCACTGCATTTCGGCCATTGCGGCATTGAAAGCTTGCTCAGC 238902 Query 31863 --GCTGCGAGCCTGCATGCGCTCGTGCATCTGCATCAGGCGCTCGATCTTGTCGATATCG 31920 || || |||||||||||||||||| || ||||||||| ||||| ||||| ||| Sbjct 238903 TTCCTTGGA--CTGCATGCGCTCGTGCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCG 238960 Query 31921 ACGCTCGGGTCGCTGGCGGCCTTGCTGATGA 31951 | | || ||| ||| || |||||||| Sbjct 238961 CAGGTTGGATCGGCGGCAGCACGGCTGATGA 238991 >seq215 Length=48791 Score = 86.0 bits (94), Expect = 2e-12 Identities = 201/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 30253 GCCCTCCCCATCTATCAGGTTGCGTCCACTTCACGCCGCACTCAGCGCCATACGCCGTG- 30311 |||||||||| | || ||||||||| ||| ||| ||||| | || ||| Sbjct 8069 GCCCTCCCCAGTTGTCCTTTTGCGTCCAGCGCACCTGATGCTCGGCGCCGAAGGC-GTGC 8011 Query 30312 ATCCATTCAATGAGACTGGCACATCGCTTCTTGCTCAGTTTGCTGGTCTGCGTGTAGAGG 30371 | |||||| || || | | || |||| | | || |||||||| || ||||| | Sbjct 8010 ACCCATTCGATCAGCTCGCCGCACTGCTTTACGGTGAGCTTGCTGGTGCGCTCGTAGATG 7951 Query 30372 ACATCGATTCCCTGACCGTCGATGGCCGGGATCATGTGCGGATTCTTGCCTTCCTCCCGT 30431 || |||| || | ||||| | || |||||||| ||||| || | ||| ||| || Sbjct 7950 ACGTCGAAACCGTTGCCGTCTACCGCAGGGATCATCTGCGGCTTGTCGCCCGACTCACGC 7891 Query 30432 AGCCACGCGGCTACACAG-AGGCGCTTCCAGACCGATGCCGACCATTTCTGCCCGGCGTG 30490 ||||| ||||| ||| ||||||||||||| | | ||| |||| ||||||||| Sbjct 7890 AGCCAGGCGGCCGT-CAGCAGGCGCTTCCAGATCAGGACATCCCACTTCTTCCCGGCGTG 7832 Query 30491 GTCCACTTGCTCGGCGAGATC--CTTGAGCATGGCGTGGAGCTTCTTGTTCTGCTC 30544 || || || |||||| ||| | |||| || || || |||||||||||| Sbjct 7831 CTCGACCTGGGCGGCGATATCGGCCAGAGC--CGCATGCAGGGCCTTGTTCTGCTC 7778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136460501564310