Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq816 556 4e-154 seq215 140 1e-28 seq2164 86.0 2e-12 >seq816 Length=14434 Score = 556 bits (616), Expect = 4e-154 Identities = 534/682 (78%), Gaps = 2/682 (0%) Strand=Plus/Minus Query 11514 TCACCTCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTTTC 11573 ||| | |||||| || || || || ||||| || || || ||| |||||||||||| Sbjct 9247 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 9188 Query 11574 AATGAACTCTGGCACCGCTTCCGTGAAGTCTT-CCATGTACTTTTCATCACGCTCGACAA 11632 |||||||| |||||| || || || || ||||||| |||||||| ||||| || | Sbjct 9187 GATGAACTCCGGCACCATCTC-GTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 9129 Query 11633 CGACATGATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCGT 11692 |||||| ||| || ||||| ||| ||||||| |||||||| || | |||||||||||| | Sbjct 9128 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 9069 Query 11693 CCTTGCCGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCTT 11752 | || | || |||||||||||| |||||||||| |||||||| |||||||| ||||| | Sbjct 9068 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 9009 Query 11753 CAAATCCGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGTGAAAGGGCACTTAAGCTCAA 11812 | || || ||||| |||||||||||||| || || || || || ||||| || || |||| Sbjct 9008 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 8949 Query 11813 GCCCGCGGCCATCACTGCAAAGCCCGTCCGGTGAGCATGCAGTGCGCATGGTTTCGTCCT 11872 | ||| ||| |||||||| | || || || ||||| || |||||||| ||||||| Sbjct 8948 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGC 8889 Query 11873 TGTAGATAATCGGCGACTCGGTTACCTGAACGCCGGCAGTAAATTCAAACAGGGCTCTTG 11932 ||||| ||||| || || || || | ||||||| |||||| |||||||||||||| | Sbjct 8888 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGG 8829 Query 11933 CGTCATCCTCGTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACGC 11992 |||| | |||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| || | Sbjct 8828 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACAC 8769 Query 11993 CGGTACACACCTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTTT 12052 |||| || |||||||| || |||||||||||||| ||||| |||||||| ||||| || | Sbjct 8768 CGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 8709 Query 12053 TACCTGAGCGTGGTTTTGATATGACGTTATGAACATCTGATGCGGTGATAACTCCGAGGC 12112 | |||||||| || |||| ||| ||||| ||||| ||||| |||||||| || ||||| | Sbjct 8708 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 8649 Query 12113 GCAGCCTCTGCCACGCCTCATCTCCCTGTTCGACCGTGAGCACATCTATCCCTGTGCGCT 12172 | | | ||||| || ||||| ||||||||||| | ||| || ||||| || |||| Sbjct 8648 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCT 8589 Query 12173 CAAGGATGATTGCGGGAGTCAT 12194 ||||| || | || ||||| Sbjct 8588 GCAGGATAATGTCCGGTGTCAT 8567 Score = 111 bits (122), Expect = 5e-20 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 12419 AGGAATCCGAGCGCCTTAACGGCTTCGATTTGGGTAAGTTCAGAGGAATCGCGAATTTCG 12478 |||||||| || || || || |||||| || || ||||| || || ||||||| ||| Sbjct 8533 AGGAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCG 8474 Query 12479 CGACGGAATATTTTCGAACAAAGAGGCAGCAGGTCTTCATCCCATGTTTTATTCATGGCG 12538 || || ||||| | ||||| || |||| | ||| |||||||||||||||| || |||| Sbjct 8473 CGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCG 8414 Query 12539 ATGAGTACGTCGTTAATTTCTTTGATGGTGGCAATATCTGCCGGGGTGATATCGCGCTCA 12598 || || | |||||| || | ||||| || | |||| ||||| ||||| || Sbjct 8413 ATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCC 8354 Query 12599 GGCTGCCTTTCAGC 12612 ||||| | ||| || Sbjct 8353 GGCTGACGTTCTGC 8340 >seq215 Length=48791 Score = 140 bits (154), Expect = 1e-28 Identities = 250/361 (69%), Gaps = 3/361 (1%) Strand=Plus/Plus Query 29508 ACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAGGCCCGA 29567 ||||| | |||||||| || | ||| | | || |||||||| ||||| || ||| Sbjct 12414 ACAGTCTTGGGCCAGGCCGAGCAAGTAGCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATG 12473 Query 29568 ATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACGCTGGCT 29627 ||||| || |||||| ||| |||||||| | ||||| |||||||| || |||||| Sbjct 12474 ATGGAGCAACAGATGCGTGATTGGTTCGGCGATGTGCCGGCATTCATCATTACCCTGGCT 12533 Query 29628 GCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGAGCATGAGCTT 29687 || ||||| ||| || ||| ||| | || |||||||| || | ||||| |||||| Sbjct 12534 GCCGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGCCTTGATCGAGCACGAGCTT 12593 Query 29688 TATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTTACCGCGACTCAGGT 29747 |||||| | || || | || ||| || ||| | | || ||| | | | ||| Sbjct 12594 TATCACCTGGCTCACGCGACCGACAAGTACGG-TCAACCAGCATTCACC-CAAGAC-GGT 12650 Query 29748 AAGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTTGGCGTTGTCCGTCGA 29807 |||||| | ||| || || || || || || ||||| || || ||||| || Sbjct 12651 GCACCGAAGATCAAGCTGCAGGGCCACGACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGC 12710 Query 29808 TATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAATAAACCAGCAGAGGTG 29867 ||||| |||||| |||| || || | || || ||||| ||||| | || || |||||| Sbjct 12711 TATGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTG 12770 Query 29868 G 29868 | Sbjct 12771 G 12771 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 7474 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAAA 7525 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152208282125130