Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq6140 120 5e-22 seq362 118 2e-21 seq7603 107 3e-18 seq160 89.7 8e-13 seq3092 87.8 3e-12 seq58 86.0 1e-11 seq1193 84.2 3e-11 >seq6140 Length=1248 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || ||||| | || | |||||| || ||||| || || ||| Sbjct 956 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 897 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 ||||| || | |||||||| || | || ||| ||||||||||| ||||| Sbjct 896 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 837 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | ||||| || |||||| ||||| || || ||| ||| | ||| Sbjct 836 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 777 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||||||||| || || | || ||||||| ||||| || || | || ||||| Sbjct 776 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 718 >seq362 Length=339261 Score = 118 bits (130), Expect = 2e-21 Identities = 212/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-GA 122421 ||||||||||| | || ||| ||| ||| | ||| | ||| || ||||||| || Sbjct 148646 ATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCA-GGGAACACAAAAGCACGA 148588 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 | | ||||| || |||||| | | || ||| || ||| | || |||| || | Sbjct 148587 CAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGA 148528 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||| || || |||||||| |||||||| |||| | ||||| ||||| || || | Sbjct 148527 AGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGAT 148468 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||| | | || || ||||| || || ||||||| ||||| || | ||||| Sbjct 148467 CTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTG 148408 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661 |||||| ||||| |||||| | ||| | || ||||| || || || ||||||||| Sbjct 148407 GGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTC 148348 Query 122662 GTGGCCA 122668 |||||| Sbjct 148347 ATGGCCA 148341 >seq7603 Length=749 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 123074 TCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCC 123133 ||||| |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 531 TCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCC 590 Query 123134 TCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTTC 123193 |||||||| || | |||||| | |||||||||||| | | || || || ||| Sbjct 591 AGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAGTTC 650 Query 123194 GTGTGGACGGGTGGGGA 123210 || ||||| || || || Sbjct 651 GTCTGGACCGGCGGCGA 667 >seq160 Length=487619 Score = 89.7 bits (98), Expect = 8e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 110297 GTAGTTCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 110355 Query 169793 TCAGTCCTGCCATTTTTAA 169811 || | | || | |||||| Sbjct 110356 TCCGGTCCGCAAGTTTTAA 110374 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 108181 GTAGTTCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 108239 Query 169793 TC 169794 || Sbjct 108240 TC 108241 >seq3092 Length=4608 Score = 87.8 bits (96), Expect = 3e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||| || |||||||| ||| | |||||||||||||||||||||||||||||||||| ||| Sbjct 3283 TGTGGCGCAGTTGGT-TAGCGCGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCC 3225 Query 169792 GTCAG 169796 ||||| Sbjct 3224 GTCAG 3220 >seq58 Length=338205 Score = 86.0 bits (94), Expect = 1e-11 Identities = 198/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-G 122420 |||||| |||||||| || ||||| || || |||||| | ||| || ||| | Sbjct 80907 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 80849 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 |||| || ||||| |||||| | | | || | | || | || | | || Sbjct 80848 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 80789 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | || ||||||||| | || ||||| ||| ||||| || |||| | |||| | Sbjct 80788 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTGA 80729 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | ||| | | | ||| | ||||||||| ||| ||||| || || ||| |||||| Sbjct 80728 TCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATCT 80669 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||| |||||||| ||||| || | || |||||||||||||| |||| ||| Sbjct 80668 GGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 80613 >seq1193 Length=13019 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/73 (88%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 169723 TTTTAGGATTG-TAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGG 169781 |||| ||| || ||| ||||||||| |||| ||||| ||||||||| ||||||||||||| Sbjct 7772 TTTTCGGAGTGGTAGTTCAGTTGGT-TAGAATGCCGGCCTGTCACGTCGGAGGTCGCGGG 7830 Query 169782 TTCGAGCCCCGTC 169794 |||||| |||||| Sbjct 7831 TTCGAGTCCCGTC 7843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777495865798000