Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq367 230 4e-56 seq4 96.9 7e-16 >seq367 Length=135625 Score = 230 bits (254), Expect = 4e-56 Identities = 838/1272 (66%), Gaps = 61/1272 (5%) Strand=Plus/Minus Query 11957 TACTCGCCGGAAGTGAAAACCGCGATGGTGCTGAAGGCAAAAGACACCATCAGCAGCGGA 12016 ||||| || ||||| |||||| ||||||||||||| | ||| ||||| | ||| Sbjct 46244 TACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAAGGCTTACGACGTCATCAAAAACGGC 46185 Query 12017 CGCCTGGAATACGATGCGGGCCAGACCGACATTACGCAGTCTTTTATGGCAATCCGCAAA 12076 | ||||| | |||||||||| ||| || || ||||||| || ||||| ||||||||| Sbjct 46184 AGGCTGGAGTTCGATGCGGGCTGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAA 46125 Query 12077 ACCATGACCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGACGCCAGC 12136 || || |||||| ||| | | ||| || ||| | |||| || || | || Sbjct 46124 ACAATCACCGCCTCCGGGCGCATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGC 46065 Query 12137 CACGCCGACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACCGCTGACCGCCGCC 12196 || |||||| | || ||||| | | ||||| |||| |||||||| || | | | Sbjct 46064 CATGCCGACCTAGCGTGGGCGCTGTTCCACGCGCTGCACAACGAACCCCTTGAAG--GGC 46007 Query 12197 AG-CGGCGGCGCTAACCCTTCAATTCTGGAATTTTACTGATGAGCAAACGCAGGGGCCGT 12255 || | ||||| ||| | | || |||| | |||||||||||| ||| | | || | Sbjct 46006 AGACCACGGCG--AACACCGGATTTATGGAGTCCTACTGATGAGCAGACGTAAGCGCGGA 45949 Query 12256 AAG--GCTTTCAAC-GCAAAAACGCAGCCCGT--------ACCGGCCGCCGCACCGCAGC 12304 | ||| | || || | || ||||| | || ||||| | | | Sbjct 45948 ACCCAGCTGGCCACCGCTCA---GCCACCCGTTGAAGGGGATTTGCTGCCGC-CTGAGTC 45893 Query 12305 AG--CAGGCGGAAGCGTTCACCTTTGGCGAGCCGACGCCGGTTATGGACAAGCGCGATAT 12362 | | || ||||||||||| || || || || | || || |||| | || || || Sbjct 45892 CGGGCCGGTTGAAGCGTTCACTTTCGGTGATCCCGCTCCCGTGTTGGATAGCCGGGAGAT 45833 Query 12363 CCTGGATTATGCCGAGTGCATCGGTAACGGGCGCTGGTATGAGCCGCCGGTCAGCTTTCA 12422 ||| || || |||||| | || || || |||| ||| | ||| | | | | Sbjct 45832 CCTCGACTACCTGGAGTGCTGGGCCAATGGCCGTTGGTTTGAAACACCGATGTCCATGGA 45773 Query 12423 CGGGCTGGCGAAAAGCCTGCGAGCG-GCG-GTGCATCACAGCTCGCCGATTTATGTGAAG 12480 ||| |||||||||| || || ||| || | || ||| ||| | | | | ||| Sbjct 45772 CGGCCTGGCGAAAACGACCCGGGCCAGCGTGTACCTC-CAG-TCGG-GCTGAACTTCAAG 45716 Query 12481 CGAAACATACTGGCGTCCACTTTTGTGCCGCACCCGATGATGAGCCAGCAGGAGTTC-AG 12539 || ||||| || || ||| || || || |||| | || |||| | || | || || Sbjct 45715 CGCAACATGCTTGCCCGCACGTTCGTTCCCCACCGGCTGTTGAGTCGCCAAGCCTTTGAG 45656 Query 12540 CAAGTTTGCGCTGGACTA--TCTGGTGTTCGGCAA-TGCCTTTGCC--GAGCTGCGCCGT 12594 || ||| || ||||||| |||||||| ||||| ||| | || || |||| Sbjct 45655 CA-GTTCGCCCTGGACTGGCTCTGGTGT--GGCAACTGC---TACCTGGAAAAGCGCAAC 45602 Query 12595 AACGGCCTCGGTGAG-CCGTGGCGACTGGAAACCACACCCGCGAAGTTTACCCGCCGGGG 12653 ||| ||| | | || ||| | ||| | ||| ||||||| | |||||||| Sbjct 45601 AACATGCTCCGCAACACCATGG-GCCTGCTGCCTCCACTGGCGAAGTACATGCGCCGGGG 45543 Query 12654 CGTGGAG--GAAGGCGT-TTACTGGTTTGTGAATGACTGGAAAGAGCCGCATCCGTTCGC 12710 ||||| | || | | |||| | ||| || |||||| || ||| || || Sbjct 45542 TGTGGACATGGAGACCTATTACCAG---GTGCGTGGCTGGAAGGACGAACATGAATTTGC 45486 Query 12711 CGCTGGCAGCGTCTTCCACCTCATTGAGCCGGATATTAACCAGGAGCTGTACGGCCTGCC 12770 | | || ||| |||| | ||| | ||||| |||||||| | ||||||||||| Sbjct 45485 CCCCGGTTCGATCTGCCACTTGCGCGAGGCCGATATCAACCAGGAAATCTACGGCCTGCC 45426 Query 12771 GGAATATCT--CAGCGCGTTAAACTCTGCCTGGCTGAATGA-AGCGGCCACGCTGTTTCG 12827 ||| | || |||||| ||| || ||| || || |||| |||||||||| || Sbjct 45425 GGAGTGGCTGGCAGCGCTGCAAAGC--GCACTGCTCAACGAGAGCG-CCACGCTGTTCCG 45369 Query 12828 CCGCAAGTATTATCAGAACGGCGCACACGCAGGCTACATCCTGTATATGACCGACGCGGC 12887 |||||||| || | |||||| || || || | ||| ||||| |||||||||||||| Sbjct 45368 GCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCATTCTGTACATGACCGACGCGGC 45309 Query 12888 GCAGA-GCAGCAGCGATATCGACCGGATGCGCCAGGCGATGCGCGACACGAAAGGCCTGG 12946 ||||| | | || || |||||| ||||| || || || ||||||| | | Sbjct 45308 GCAGAAGGAAGAG-GACATCGACTCACTGCGCACCGCACTGAAGAACTCGAAAGGGCCAG 45250 Query 12947 GTAACTTCCGCAATCTGTTTATGTACGCGCCGAACGGCAAGCCGGACGGAATTAAGATCC 13006 | ||||| ||||| |||||| ||||||||||| |||||| ||||| ||| || || Sbjct 45249 GCAACTTTCGCAACCTGTTTGTGTACGCGCCGGCAGGCAAGAAAGACGGCATTCAGCTCA 45190 Query 13007 TGCCGCTCAGCGAGGTGGCGACGAAAGATGATTTCTTTAACATCAAAAAGGCCAGCCGTG 13066 | ||| | |||||||| ||| | || || || ||| |||||||| |||||||| Sbjct 45189 TCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTCAGCTCGATCAAAAACATCAGCCGTG 45130 Query 13067 ACGACCTGCTGAGCGCGCACCGCGTGCCGCCGCAAATGATGGGGATTATCCCGGACGGTG 13126 |||| ||||| ||| ||| | || ||||| ||||||| || | ||| | | Sbjct 45129 ACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAGTTGATGGGCATCGTGCCGCAGAACG 45070 Query 13127 CAGGCGGCTTTGG--CGATTCGGTGAAGGCGGCACAGGTGTTTGTCCG-CAATGAGCTGA 13183 | ||||| ||||| || | || | |||| || |||| || | | | ||| |||||| Sbjct 45069 CGGGCGGTTTTGGGTCGTTGCG--GGAGGCTGCTGAGGT-TTGGGCGGTCAACGAGCTGG 45013 Query 13184 CGCCGTTGCAGG 13195 ||||||||||| Sbjct 45012 AGCCGTTGCAGG 45001 >seq4 Length=40630 Score = 96.9 bits (106), Expect = 7e-16 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27248 CGTGCCGCCGCCAGTCCTGCACGGGTACGCTCAACAATCAGCTCGCGCTCCATTTCCGCC 27307 |||||| | ||| || || ||||| ||||| | || ||||| ||||||||||| || Sbjct 13442 CGTGCCACGTCCAACCCGGCGCGGGTGCGCTCGATGATTAGCTCACGCTCCATTTCGGCG 13383 Query 27308 AGCGCCCCCATAACATGAAAAAAGAAGCGGCCCATTGGCGTACTGGTATCAATGCTGTCG 27367 || |||| || ||||| ||||||||||| ||| || | ||| || ||| ||| Sbjct 13382 AGGCTGGCCATGACGTGAAAGAAGAAGCGGCCAGATGGTGTGCCGGTGTCGATGGCATCG 13323 Query 27368 GTCAGGCTGCGGAAGTTTATTCCTTTTTCGCGCAGTTCCTCAGTCAGCATAACCAGATGG 27427 |||||||| ||| | | || | || | ||||||| || ||| || || || Sbjct 13322 GTCAGGCTATTGAACTGAACACCCTGTTTGTGCAGTTCGGCAACCAGATCCACTAGTTGT 13263 Query 27428 CGCATGCTGCGGCCAAGACGATCCAGCTTCCACACCACCAG 27468 | |||||| || || ||||| || ||||||||||| || Sbjct 13262 TTGACGCTGCGTCCCAGGCGATCGAGTTTCCACACCACAAG 13222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94467486558060