Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq400 286 9e-73 seq215 187 6e-43 seq504 109 1e-19 seq24 102 2e-17 >seq400 Length=38681 Score = 286 bits (316), Expect = 9e-73 Identities = 356/488 (73%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 22207 ATAGCGGGCCCGTCTGTCGTCCAGCCCGTTCTGCCCACCGTTAATAATCTGCGTGACGCG 22266 ||| || || || | |||||| | |||||||||||||| || || |||||||||||||| Sbjct 33071 ATACCGCGCACGCCGGTCGTCGATGCCGTTCTGCCCACCATTGATGATCTGCGTGACGCG 33012 Query 22267 CAGCAAATCGCCCGGATATTTCAGGCAGCCTTTGCTGGTATAGAACCATGCTGCAGATCG 22326 || || ||||| | || |||| |||||||||| | | ||||||| || || || Sbjct 33011 CACCAGGTCGCCGGTGTACTTCATGCAGCCTTTGGTTGCGAAGAACCACGCCGCGCTGCG 32952 Query 22327 CGCTGCGGTGGCGTCTTTGGAAAGCAGTTCCGGCGAGCTCACAAGGTCAAGTTTCAGCGC 22386 || ||| |||| | | ||||| || ||| | || || || | ||||| | Sbjct 32951 GGCCGCGTATTCGTCCTGCGCCAGCAGCTCAGGCTGCTTAACCAGATCCACCTTCAGGCC 32892 Query 22387 GGCGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGGATGAGCCCGCGTCCGCGATA 22446 |||||| ||||| || || | ||||||||||||||||| |||||||| ||| | || Sbjct 32891 ATTGCCGCAGTCGCGATAGTTGTTCAGCCCGGTGATCTGGATAAGCCCGCGCCCGAGGTA 32832 Query 22447 TTTCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTGCTGTAAACCAGATTGGCGAT 22506 |||||| ||| ||| |||| || || | | |||||||| ||||| |||||||| Sbjct 32831 AAACCAGCCGTCAGTCGGACCGTTGTTCCCCATTCTTTTGCTGTACACCAGGTTGGCGAT 32772 Query 22507 CGCGCGCTGGCGTTCAAGGGGCAGCACCTTTTCATACGTGCGGCGGCCCAGCGTGTTGGC 22566 ||| |||||||| || || || | | |||| | || |||||||||| ||| || Sbjct 32771 CGCACGCTGGCGCTCCAGCGGTAACGATGGTTCACCAGCACGACGGCCCAGCGCGTTAGC 32712 Query 22567 CTGATCCTGAGTTAACCGGCCAGCCCGGACAAAATCATTAAGCGCTGCGATGCTGTAGTT 22626 |||| ||||||||| || || | ||||| ||| | ||| |||| | ||||||||| Sbjct 32711 CTGACCCTGAGTTAGGCGCCCGGTACGGACGAAACCTGCCAGCCCTGCTACGCTGTAGTT 32652 Query 22627 GAAGCTCTCTTCCAGCCTGGTAAAGCCGGTGCTTTCATGGCCGACCTGCGCGATGAACAT 22686 |||| | || | ||||| |||||||||||| ||||| |||||||||||||| ||||| Sbjct 32651 GAAGTTTTCCTGCAGCCGGGTAAAGCCGGTAGACTCATGCCCGACCTGCGCGATAAACAT 32592 Query 22687 TGCCTGGT 22694 ||||||| Sbjct 32591 CGCCTGGT 32584 >seq215 Length=48791 Score = 187 bits (206), Expect = 6e-43 Identities = 545/827 (66%), Gaps = 22/827 (3%) Strand=Plus/Minus Query 3153 GTGACGCGGTACTGCTGGATTGCCACATCCTGCGCATCCACCGACCAGACCGCCTCGCGC 3212 || || |||||| | |||| |||| || | || || | || ||| ||| || ||| Sbjct 32752 GTCACCCGGTACAGTGGGATGGCCAGGTCGTCAGCGTCGAGCGCCCACACCAGTTCACGC 32693 Query 3213 TCCGGCGTTTCGCTGAATACCGCAGATACCGTGACGTTTCGGCCGCTGACCGCCTGAAGG 3272 || |||| || | | ||| | |||||||| | |||||||||||| || | | Sbjct 32692 TCAGGCGGCACGGAGTACGCCGTGGTGACCGTGACCTGGCGGCCGCTGACCAGTTGCACG 32633 Query 3273 GTACGGGCCTGTGATTTGCCGGACGGCAGGTTGACGATAAGCCTGTCGCCCGCTTTTGCA 3332 || || ||| | |||||| |||||||||| ||| |||| ||| || | ||| || Sbjct 32632 GTGCGCCCCTCGCACTTGCCGTCGGGCAGGTTGAGGATCAGCCGGTCACCGGGTTTGGCC 32573 Query 3333 TCCGGCGCCCGGTCGAGCGTCAGCGCGCGACCGTTCAC--CTGACTGATACGCCCGCCCA 3390 | | | ||||| || || | | ||||| || |||| ||| ||||| |||| Sbjct 32572 TGGGTGTCGCGGTCCAGGGTGATGACTTTGCCGTTTACGGCTGA--GATGCGCCCACCCA 32515 Query 3391 TCACCCGCCCCGACAGATACTGATCCGCCACGCCGATGATATGGCCCGGCAGCGGGATCA 3450 ||| || | ||| | || || | | || | ||| ||||| ||||| Sbjct 32514 CGGGCCGACCGGCCAGCAGTTCGTCAGCGATCGGAACGACGTAGCCAGGCAGAGGGATAC 32455 Query 3451 TGCCTTCCAGCCCAGTGGTGAAAC-TCACCATCCGGTCTTTAGCATTTGTCAGCAGCGCC 3509 || ||||| || | ||||| | ||| |||||| || | || || |||| |||| Sbjct 32454 GTCCGTCCAGGCC-GACACGAAACGTTACCGCCCGGTCCTTGGAGTTGGTGAGCAACGCC 32396 Query 3510 CAGCGGCCGCGGCGGTTGGCCTCGGTACGC-CGCGTGCAGCCGATGGCGGATATCTGCGT 3568 || ||||||||| | ||||| | || | |||||||||||||| ||| |||| | Sbjct 32395 CACTTGCCGCGGCGCTGCGCCTCAG-ACTCACGCGTGCAGCCGATCGCGCTGATCTCCAG 32337 Query 3569 CTGGCGCACGCCGTAGCGCCGCACCAGATCAGGCTCCATCACCGCTTCCACTTCATCGGT 3628 | || |||||||||||||| ||| | | || |||| || || || | Sbjct 32336 CGGGTTATCGCCGTAGCGCCGCTGCAGCTTCTGATCGGTCACGGCCGTGACGTCGGTGTC 32277 Query 3629 GTAATGGTTCTCCGGGTTTGACCAGCTCACCATCGCCGTTGAATAACGGTTCTTCTC-GC 3687 ||| | |||| |||||| |||| |||| |||| ||||| || | ||| | Sbjct 32276 GTAGTTGTTCAGCGGGTTGTCGTAGCTGACCAGCGCCCGGGAATAGCGTGTGCGCTCCGA 32217 Query 3688 TGCCGCTGGCGTAGGAGAATTTGCCGTCAATAACGTTGGCGCGGGTGTAGACATAC---- 3743 ||| ||| | |||| ||| ||||| || || ||||| || ||||||||| | | Sbjct 32216 TGC-GCTCGAATAGGTGAACTTGCCATCGATGACGTTCGCCCGGGTGTAGGCGAAGTCGA 32158 Query 3744 -GTCA-TATCGCGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCA 3801 |||| | ||||||||||||||| ||| | | | || |||||| || |||| Sbjct 32157 AGTCAGTGGCGCGCGGCATATCCGACAGGGTGAAGACTTGGCCCTGGGCCCAATAGGTCA 32098 Query 3802 TGCCGCGGAAGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGGA 3861 |||| ||| | || ||| | ||||||||||| || | || || || |||||| | Sbjct 32097 TGCCTCGGTAAATCGTCGAGATGTCGCGCAGCAGCGACCATGCATCCGCCTTGCTCTGCA 32038 Query 3862 TATACACGTCGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGG 3921 | || ||||||| ||||| || || | | ||| || | |||| |||||| Sbjct 32037 AGTTCAGATCGCAGATGAAACGCGGTTC----CTG--GCCACCCTTCCCGTTCGGCACCA 31984 Query 3922 GCTGATCGCAGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCACC 3968 ||||||||||| ||||| |||||||| || ||||||||||| ||| Sbjct 31983 TCTGATCGCAGTACTGCGAAATGCGGTACAGCTCCCACTTGTCGACC 31937 >seq504 Length=2036 Score = 109 bits (120), Expect = 1e-19 Identities = 218/315 (69%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 36848 CCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGCTGCAGAT 36907 |||||| ||||| |||| || || || || || || || ||| ||||||| ||| | | Sbjct 1953 CCGGCAATACTGACGCTCCCCACGTAGTTTCTCTGCGGCCCGCTCTGCATA-CTGAACAA 1895 Query 36908 -AGCCTGGCGCATCGCTTCATAGTCAGTGATTCGCTCCCCGAATGACCGGCTGCAGACGA 36966 ||||||| |||| || || | ||| |||||||| || || || || || ||||| | Sbjct 1894 CAGCCTGGTGCATGGCATCTTTGTCTGTGATTCGTTCACCAAAACTGCGACTACAGACAA 1835 Query 36967 TTTCCTGTTTTGCCGGGGCAAACTCCTCGATCTCCAGACAGGGCTCGCCGCGCAGCTCGC 37026 | | |||||||||||| | || || | | |||| ||||||| || |||| Sbjct 1834 TCTGCTGTTTTGCCGGTGGTGCTTCTTCCAGGGATATGCAGGACTCGCCGTTGAGTTCGC 1775 Query 37027 GCACGGTGCGCTCCAGCACGACGTTAAAGTGTTTGCGGAT-AAAGCGGATGTCGGTATCA 37085 | || || ||||| || | |||| | |||| ||| ||||| || || | ||| | | Sbjct 1774 GTACCGTACGCTCAAGAATGACGCTGAAGTTTTTCCGGATGAATGCCG-TGTTAGCCTGC 1716 Query 37086 CAGAGCTGCAGTGCATTTTTAATACTCATTGCCTCCAGC-TTTCTGGCAATACGCCGGCC 37144 ||||||||||| | ||||||| || || | |||| |||| | || | | || || Sbjct 1715 GCCAGCTGCAGTGCTGTGTTAATACCCAGCGCATTCAGCTTTTCCGTCAGT-CTGCGTCC 1657 Query 37145 GACGCCCCAGACTTC 37159 || |||||||| || Sbjct 1656 TACTCCCCAGACCTC 1642 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 37448 CATCACCCGCTGGCTCATGTCGCCATAGAGTTCATAGTTGCTGGAGAAGGCAATGATCCG 37507 ||| ||||| ||||||||| | || || |||| |||||||| || || || Sbjct 1347 CATGACCCGTTGGCTCATGCTGTGGTACAGCGCATAATTGCTGGAAAATACATGTATTTT 1288 Query 37508 CTGCGGAAACTGCATCTCGCGCAGCTGGAACCAGGGCATGCCCATTTTTATGCCAAGCGC 37567 || | | |||||| | || ||| ||||||||| |||||| | |||||||| || Sbjct 1287 CTTCTCCAGGCGCATCTGTCTCACCTGAAACCAGGGCTGCCCCATTCTGATGCCAAGGGC 1228 Query 37568 TTTGGCTTCGCGGCTGCGTGCTATCACACAGCCATCATTATT 37609 ||| || || ||||||| || |||||||||||||| ||||| Sbjct 1227 TTTTGCCTCCGGGCTGCGCGCGATCACACAGCCATCGTTATT 1186 >seq24 Length=857 Score = 102 bits (112), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 21934 GCAGAGCAGCATTTTCAGCATTCGCATCAGCGAGTTCCTTCGTGTATTTGGCGTCGAGCG 21993 |||||||| |||||||||| ||||||| ||| | |||||||||||||| | || || | Sbjct 717 GCAGAGCATCATTTTCAGCTTTCGCATTAGCTAACTCCTTCGTGTATTTTTCATCCAGTG 658 Query 21994 CTGCGACATCGCGCTGGCGAGTCTGCATGTCAGTGATGGTGTCTTTAGCCAGATTTAATT 22053 | || ||||| |||||||| ||||||||||||| || | | || ||||| || | || Sbjct 657 CAGCAACATCACGCTGGCGCATCTGCATGTCAGTAATTGCCGCGTTCGCCAGCTTCAGTT 598 Query 22054 C 22054 | Sbjct 597 C 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124696058426940