Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq523 567 2e-157 seq9928 107 5e-19 seq215 84.2 5e-12 >seq523 Length=83696 Score = 567 bits (628), Expect = 2e-157 Identities = 1128/1642 (69%), Gaps = 49/1642 (3%) Strand=Plus/Plus Query 178 ATCCAGCGGCCTGCCCATACCACGCGACCAATGATGTCGATTGCCTCTAGGTCTTGCTTG 237 ||||| | ||| |||||||| ||||| ||||| || || | | | | | | | || Sbjct 48650 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48709 Query 238 G--ACACGTACATCGTCTGGTAGGCCGAATTAGCGCTAATGATCGC--TAGACCGCCATT 293 | ||| | |||| |||||||| || | || ||||| |||||| | | Sbjct 48710 GGGACAACCATATCGC--GGTAGGCCTTGTTCTCACTGATGATGTGAATAGACC--CGTC 48765 Query 294 GATTTGCCGCTGGATTCGCTTGGCGTATAGGTGGTCATCCAACCGAATGACGTAGATAGC 353 || |||||||||| | || || || || |||||||||| ||| |||||||| | ||| Sbjct 48766 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 48825 Query 354 CTCGTCGCGGACCTCGCCGCAGCTGTGGTCAATCATCACCGTATCACCATCGCTCAACAG 413 ||| | | | || || |||||||||||||||||| ||||| |||||||| | || Sbjct 48826 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 48885 Query 414 CGGCTCCATTGAGTCACCGCCGATGCGAACGGCTGACATATTCGCTATCTCCAGACCTTG 473 |||||| || || ||| | | || | || |||| ||| ||||| ||||| Sbjct 48886 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 48945 Query 474 CTTCCGCAAGC-TGTA-GCGAGTGAACGCCAGCTTGGCCAAGGTCCG-CGCGCCCTCCAT 530 ||| || |||| ||| ||| |||||||| ||| ||| ||| | | || || || | Sbjct 48946 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGC-TGGGTTAGGACAGTAGCCCCTTCGCT 49002 Query 531 CCAGGAACCGTGGCCAGCACTCACCCGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTGTC 590 ||||| ||||| || ||||| | |||||||| | || ||||| ||||| |||| Sbjct 49003 CCAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC 49062 Query 591 ATCCTCTGCGGCTTCATCCGGG--GCAGCGCTGTGCA---TTTCCCCCTCCCCGGTAGCT 645 ||| | || | ||| ||||| | | || | |||||||| || | ||| Sbjct 49063 CTCCGCAATGG-----ACTGGGAAGCAGCTCCCTTCAACTTGTCCCCCTCGCCTGAAGCA 49117 Query 646 AGCCAGCCAATGTCCACCCCCGCAGCCTTTGCAATGTCCACACACCGCGCAAGCTTGGGT 705 |||||||||||||| || || | ||||| || ||||| ||||||||||| | |||||| Sbjct 49118 AGCCAGCCAATGTCGACGCCGACCGCCTTAGCGATGTCTACACACCGCGCTACCTTGGGC 49177 Query 706 TCACTGTCGCCGGTCAAGTAGTACTCCAGGGTACGCCTAGGGATAGCGGTTAGTCGCGCG 765 ||||| | ||||||| ||| ||||| ||||| || | ||||||||||| |||||||| Sbjct 49178 TCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGCGGTAAGTCGCGCC 49237 Query 766 AGTTCATCGCCACTTCCAACCAAGGCGGCGCAGGTTCTAATCCGAGCAGCCAGACCTTCG 825 | |||||||||||||| | | | ||||| | || || | ||||| |||||| Sbjct 49238 AACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTCCGCCAGCCCTTCG 49297 Query 826 GTCATTTCGCTTTCCCCTCAGAAGAAAGCGAAA-TGCAGCCAAGAAAAATAGCTAAATTT 884 ||||||||||||| || || | ||||| ||| || | | || ||| |||||| Sbjct 49298 CTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCACAA-AGCGAAATTT 49356 Query 885 CGCTTTGTC-AGGAAGCCTTTAGATATCAATGACTTAGCCAATTCTCGCCTCTTTATTGA 943 |||||| || | ||||| ||| | ||||| || ||| ||| || | | | Sbjct 49357 CGCTTTCTCGATAAAGCC-TTACAGATCAAAGAGATAGACAAAATCAACCACCATCAAGC 49415 Query 944 TAAATCTGGCAAGCGAAACGCCATTTTTCGCTTTACCAGTTGGCTGTTAATGGCTATGTT 1003 ||| ||| |||||||| ||||||||||||||||||| | | | | |||||||||| Sbjct 49416 CAAAGATGGAAAGCGAAAAGCCATTTTTCGCTTTACCACATAGTTATATTTGGCTATGTT 49475 Query 1004 TATGCCCTAAGTCACGTTAGACAACCCAAGTAGTCGCCCTGCATGGCGGCT-GAAATGGA 1062 ||||||||| || |||||||||| ||||| | | |||| || || | |||||| Sbjct 49476 TATGCCCTAGGTAACGTTAGACATCCCAAAAAACCACCCTTGCCGGTGGTTATGAATGGA 49535 Query 1063 ACGTAGGCATGAACAGAACCGAAATCCCCCGCGACAACAACGTCCGCTGGGAGTGGATCA 1122 |||||||||||| |||||||||||| | ||| | | | || ||||| ||||||| Sbjct 49536 CGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGGAATGGATCA 49595 Query 1123 AATACCAGCTCCGTGCCAGGGGGTCGTCCCTGGCTGAGGTGGCCCGCTCCCTCGACGTCT 1182 ||||||| || ||| || | || |||| || || |||| || || ||||| | Sbjct 49596 AATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAACTTGACGT-T 49654 Query 1183 CCAG-CCCGGCAGTCAAAAACGCCAAGCTGACTCCCTACCCTCGGGTAGAGCGCGCCATA 1241 ||| | || ||||| ||||| |||| || | || || || | ||||| || || Sbjct 49655 ACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAGCGAGCTATT 49714 Query 1242 GCTGCTGTACTCGACCTCAGCCCGCTAGTGCTGTGGCCAGAGCGCTGGCTAGACGACGAG 1301 || || || | ||||| || | | ||||||| || || ||| | ||| Sbjct 49715 GCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAACGCAAACGGC 49774 Query 1302 AATCCGAAGCGGCAACGGCCGAATCGCTCGGAGACCTTGCAGGCATATGTCAGACATATG 1361 | || | || ||| | | ||| | || || | ||| | || || | Sbjct 49775 ACCCCACACCGTATTCGGGTGCAGCGCGCAGA-AC--ACAACGCA-ACTTC-----TA-G 49824 Query 1362 CCAGGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGCGTAAAGCCGGCGCGGGG 1421 ||| | || | | |||| | || || || |||||| ||||| ||| | Sbjct 49825 CCAAGAGC------ATAACCCAGCT--TATGCCCTTCGACACCGTAAAACCGGCACGGAG 49876 Query 1422 GCTTGAACATGGCCCGCCGCAAAGACGATCGAACGCTGGACATCTTCGATGTTCCGCAGC 1481 | | |||||| ||| || || ||||| ||| | ||||||||| ||| || |||| Sbjct 49877 GTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGC 49936 Query 1482 CGGCCCTCGCTATACCTGGTGAGTGCAACTACGCCGCTCAAGTCAGCGAACTGGTCAGCG 1541 | | || ||||| || || | ||||| | ||||| || ||||| |||||| |||||| Sbjct 49937 CAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCG 49996 Query 1542 AAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGCCCGGATGTCGCGCCTGT 1601 | |||||||| | || ||| || ||||||||||| | | || || ||||| ||| ||| Sbjct 49997 AGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGT 50056 Query 1602 CCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCGCCCGAACTGATC 1661 | |||||||||||||| ||| ||||||| ||||| |||||||| || |||||||| || | Sbjct 50057 CTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACC 50116 Query 1662 ACAACTTGCCTTTCTACCGCGCCGCCCTTCTGGAGGACGTCTGCGCGAGCCATCTGCTGA 1721 | ||| |||| ||||| | ||| | || || || || || || || || | | | Sbjct 50117 ATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAA 50176 Query 1722 CCAACTGGCTGGTCGATGTACGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTGCTCG 1781 || |||||||||| || |||||| ||||||||||||||||| ||||||||||| || Sbjct 50177 CCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACG 50236 Query 1782 CCGAACTGGGCCGCCTTGAGCG 1803 | || || || || || | ||| Sbjct 50237 CGGAGCTTGGTCGTCTGGCGCG 50258 Score = 131 bits (144), Expect = 4e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 9390 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 9449 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 56889 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 56947 Query 9450 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9507 ||||||||||||||||||||| ||||| ||| | |||| ||| | ||||||||| Sbjct 56948 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 57005 Query 9508 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9539 | || || |||| || ||||| ||||||| Sbjct 57006 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 57037 Score = 127 bits (140), Expect = 5e-25 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9786 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTG 9845 || ||||||||||||||| | || || |||| || || ||||| || || ||| || Sbjct 57266 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57325 Query 9846 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9905 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 57326 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57385 Query 9906 CTGGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGG 9959 |||| ||| | ||| |||||||| ||||||| | || ||| ||||| Sbjct 57386 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57442 Query 9960 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 10019 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57443 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57502 Query 10020 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 10079 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 57503 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57562 Query 10080 GAGCGGGTCGAGTGGCTGGAC 10100 ||||| || || ||||| ||| Sbjct 57563 GAGCGAGTGGAATGGCTAGAC 57583 Score = 86.0 bits (94), Expect = 1e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 6920 GCCTGGGGCGAGCGTCCGCCTGTCTTCGTCCAGCTGCTGGCCGCCGAGGTGGCCCGCAGC 6979 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 53731 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53790 Query 6980 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 7039 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 53791 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53850 Query 7040 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 7099 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53851 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53910 Query 7100 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTG 7149 | || ||||| || ||| ||| |||| | || ||| ||| | |||| Sbjct 53911 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 53960 >seq9928 Length=455 Score = 107 bits (118), Expect = 5e-19 Identities = 250/372 (67%), Gaps = 4/372 (1%) Strand=Plus/Plus Query 13796 CGCCGCCAGATCGAGGCCGAGGTCGCAGGCTTCGACCCCGACC-CGAAGGCCAGCGCCGC 13854 ||||||| | |||||||||| || ||||||| |||||| || || | | | | Sbjct 86 CGCCGCCTGGTCGAGGCCGAATGCGATGGCTTCGCGACCGACCACGCAGCGC-GTGACCA 144 Query 13855 CCGGCGTGAACGGGC-CAGCGCGGACTATGAGTATTTCGCCCGGACCTACTTCCCGCACT 13913 || ||| ||||| ||| || |||| |||| ||| || ||||| ||||| |||| Sbjct 145 GCGCCGTACCCGGGCGCAGACCG-ACTACGAGTTCTTCTGTCGCACCTATTTCCCTCACT 203 Query 13914 ACGTGAAGCGCGGTAACGCGCTGCTCCACGACTACCTCTACAAGCGGTTGCCCGAGCTAG 13973 |||||||| ||| ||||| |||| || ||||| | |||||| || | Sbjct 204 ACGTGAAGAGCGAGGCATCGCTGTTCCATCGCTGGTTCTACGACACCGTGCCCGGCCTGG 263 Query 13974 TGGACCACCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCA 14033 | || || || || |||| | | || |||| || |||||| | || ||||||| Sbjct 264 TCGATCAACCCACGGGGCAGCTCATCGAGATCTCGGCCCCACGTGGTGAGGCGAAGTCCA 323 Query 14034 CCCTGGTGAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCC 14093 |||| | | ||| | ||| | | ||||| || | |||| ||||||| | | | Sbjct 324 CCCTCGGTACGCAGCTCTTCACGCTTTGGTGTGTGGTGACCGAGCGCAAGCGATTCATTC 383 Query 14094 TGATCATCATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAAGCGATCAAGGCGGAGC 14153 | | | ||||| |||||| |||||||| || |||||||| || |||||| |||| Sbjct 384 CGCTGGTGATGGACAGCTTCGACCAGGCCGCGACCATGCTGGAGGCCGTCAAGGTCGAGC 443 Query 14154 TGGAGTTCAACC 14165 ||||| ||||| Sbjct 444 TGGAGAGCAACC 455 >seq215 Length=48791 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11477 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11534 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 11535 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11594 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11595 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11651 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11652 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11711 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11712 C 11712 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118089157399290