Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq523 286 8e-73 >seq523 Length=83696 Score = 286 bits (316), Expect = 8e-73 Identities = 558/814 (69%), Gaps = 28/814 (3%) Strand=Plus/Plus Query 978 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTT 1037 ||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||| Sbjct 49468 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAA-CCACCCTTGCCGGTGGTT 49526 Query 1038 GAGATGGAACG-TAGGCATGAACAGAACCGAAATACCCCGCGACAACAACGTCCGCTGGG 1096 || | ||| |||||||||||| ||||||||| || | ||| | | | || |||| Sbjct 49527 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 49586 Query 1097 AGTGGATCAAATACCAGCTCCGCGCCAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1156 | |||||||||||||| || || || | ||| |||| || || |||| || | Sbjct 49587 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 49646 Query 1157 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCTCGGGTAGAG 1215 | ||||| | ||| | || ||||| ||||| |||| | | || || || | ||| Sbjct 49647 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 49705 Query 1216 CGCGCCATCGCCGCTGTGCTCGACCTCAGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTC 1275 || || || ||| || ||| | ||||| || | | ||||||| || || ||| | Sbjct 49706 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 49765 Query 1276 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGTTCGGAAACCCTCAAGGCATATGAC 1335 | ||| | || | || ||| | || | ||| | ||| ||| | Sbjct 49766 GCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA---CACAACGCAACT--- 49819 Query 1336 AGTGTCATATGCCGATCCGGGAAAAATAACAGATACGCTGA--CCAAGCG-CAGCGTAAA 1392 || || ||| | | ||||| | ||| | || || || |||||| Sbjct 49820 ----TC-TA-GCCAAG------AGCATAACCCA---GCTTATGCCCTTCGACACCGTAAA 49864 Query 1393 GCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACATCTTCG 1452 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 49865 ACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCT 49924 Query 1453 ATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACGCCGCCCAGGTCAGCG 1512 ||| || ||||||| || ||||| || || | ||||| | ||||| |||||||| | Sbjct 49925 CTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTG 49984 Query 1513 AGCTGGTCAGCGAAATACTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCA 1572 | ||| ||||||| || ||||| | || | || ||||||||||| |||| || |||| Sbjct 49985 AACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCA 50044 Query 1573 TGTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCG 1632 |||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || | Sbjct 50045 TGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAG 50104 Query 1633 CCCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAAGACGTCTGCGCGA 1692 ||||| || || ||| |||| ||||| | ||| | || || ||||| || || | Sbjct 50105 CCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCA 50164 Query 1693 GCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGTGGCCGCGTGGCCTATGGCCGAG 1752 | ||| | | ||| |||||||||| || || |||||||||||||| || || || | Sbjct 50165 GTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCG 50224 Query 1753 ACGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1786 | ||||| ||| || || || || |||| ||| Sbjct 50225 ATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 50258 Score = 134 bits (148), Expect = 3e-27 Identities = 214/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 294 GATCTGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGC 353 || ||||||||||| | || || || | ||||||||||| ||||||||||| ||||| Sbjct 48766 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 48825 Query 354 TTCGTCACGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAG 413 || | || | ||| ||||||||||||||||| |||||||||||||| | || Sbjct 48826 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 48885 Query 414 TGGCTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTG 473 | |||||| || || ||| | | |||| || |||| ||| ||||||||||| Sbjct 48886 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 48945 Query 474 CTTCCGCAAGC-TGTA-GCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTC 531 ||| || |||| ||| ||| ||||| || | ||| | || | ||||| || || Sbjct 48946 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTC 49003 Query 532 CAGGAGCCGTGACCAGCGCTCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCG 591 |||| |||||| || || || | ||||| |||| ||| | || ||||| ||||| Sbjct 49004 CAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 49063 Query 592 TC 593 || Sbjct 49064 TC 49065 Score = 122 bits (134), Expect = 2e-23 Identities = 132/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 8279 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8336 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 56866 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 56924 Query 8337 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACG 8396 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 56925 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 56984 Query 8397 GACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8449 | ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 56985 CAGCGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 57037 Score = 118 bits (130), Expect = 2e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 8696 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8755 || |||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57266 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57325 Query 8756 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8815 | ||||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || Sbjct 57326 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57385 Query 8816 CTGGTCGAACTCCAGCGCTTGGGCTGG------AAACCGAAGAGCAATCGGCAAGGCCGG 8869 |||| ||| | |||||||||||| ||||||| | || ||||||||| Sbjct 57386 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57442 Query 8870 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 8929 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57443 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57502 Query 8930 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 8989 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 57503 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57562 Query 8990 GAGCGGGTCGAGTGGCTGGAC 9010 ||||| || || ||||| ||| Sbjct 57563 GAGCGAGTGGAATGGCTAGAC 57583 Score = 86.0 bits (94), Expect = 1e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 5670 CGCCTGTCTTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCG 5729 |||| | ||||| | |||| |||||||| || || || || | |||| |||||| Sbjct 53747 CGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACCAACAAGACCAAGGCCA 53806 Query 5730 GCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGT 5789 || || |||||||||||||| || |||||||| | ||| |||||||||| ||| Sbjct 53807 GCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTTTCCAACCGCTATGCGT 53866 Query 5790 CGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCC 5849 ||||| | | | || ||||| || || ||| | ||| | || ||||| || Sbjct 53867 CGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTGGGGCGCATTGAATGTG 53926 Query 5850 CGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 5884 ||| ||| |||| | || ||| ||| | ||||| Sbjct 53927 TCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 53961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116431833073710