Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq523 336 5e-88 seq9928 102 2e-17 >seq523 Length=83696 Score = 336 bits (372), Expect = 5e-88 Identities = 1092/1669 (65%), Gaps = 85/1669 (5%) Strand=Plus/Plus Query 189 ATCCAATAGCTGGCCCAAACCACGCGCCCGACAATATCCAGGTCTTGCAACTGCTCTTTG 248 |||||| || ||||| || ||||| || | || |||||||| | ||||| || || Sbjct 48650 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48709 Query 249 GGCACAGTCATTTCTGTGTACGCCCGATTCTCGCTTATGATCGCAATCGATCCGTCAAAC 308 || ||| ||| || ||| ||| ||||| || ||||| ||| || ||||| ||| Sbjct 48710 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48769 Query 309 CTACGCTGTAGGCGCTTGGCATACAGGTGATCCTGGAGCCGGATGACGTAAACAGCCTCG 368 ||||| || | || ||||| || || || | |||||||||||||| |||||||| Sbjct 48770 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 48828 Query 369 TCCCGTACCTCTCGATACGA--GTGGTCAACCAGGACGGTATCCCCATCGGACAACAACG 426 |||| | | | | || |||||||| || || ||||| |||||| | | Sbjct 48829 TCCCTCAAG-CGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTC 48887 Query 427 GCTCCATTGAGTCGCCGCCAACGCGGACAGCTGAGAGGTTAGCGGTGTCGAGCCCCTTCT 486 |||||| || || ||| | || |||| || || || || | ||| || || | || Sbjct 48888 CCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCT 48947 Query 487 TTCTCAGGCTGTACCTGGTAAACGCCAGCTTCGTCAGTTCTCGGGCTCCCTCTGTCCAGG 546 | | || |||| ||| ||||| |||| || || | || || || |||||| Sbjct 48948 TGCGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGG 49007 Query 547 AGCCATGTCCCGCGCTTACTTTCGTGTCATACAACGGGATGTAGGCATAGTCGGGGGCTC 606 ||| |||||||| || | | ||| ||||| || | ||| || || | | ||| Sbjct 49008 CGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC--CTC 49065 Query 607 C-CGCTGGGCT----AGCGGCCTCTGGCGACTCGCCCCCCGTACTCCCCGATGCACTCTG 661 | | ||| || ||| || | | ||| | ||||| || || || | Sbjct 49066 CGCAATGGACTGGGAAGCAGCTCCCTTCAACTTGTCCCCC----TCGCC--TGAA----- 49114 Query 662 TTTGCCGGCGATCAACCAATCCAAGGATACGCCTGCCGCCTCCGCTATAGCCGCACAGCG 721 || || || ||||| | ||||| |||||| || || | |||| || Sbjct 49115 ---GCAAGC---CAGCCAAT----GTCGACGCCGACCGCCTTAGCGATGTCTACACACCG 49164 Query 722 GGATGCCTTTGGCTCGCTATCACCTGTGAGGTAAGCCTCCAAGGTGCTTCGGGGGATAGC 781 | | |||| ||||| || | || || |||||| ||| | ||||| ||| |||||||| Sbjct 49165 CGCTACCTTGGGCTCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGC 49224 Query 782 CGTTTTCCGGGCGAGGCTATCACCGTTTCCGACTATGTTTGCGCACTCACGAATGCGGGC 841 || || || | ||| || |||| |||| | ||||| | || || || | Sbjct 49225 GGTAAGTCGCGCCAACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTC 49284 Query 842 CGCAAGGCTGTCTGTCATTTCGCTTTCTCACCTGAGGAATACGAAAC-------CTGGAC 894 ||| || | || ||||||||||||||| | |||| || |||||| ||| || Sbjct 49285 CGCCAGCCCTTCGCTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCAC 49344 Query 895 GAAACTAGGTTTCTGATTTCGTATTCCGaaaaaaaCCATACAAATCAACGATATGGTCAA 954 || | | |||| | |||| ||| ||| || |||| ||||| || || | ||| Sbjct 49345 AAAGCGAAATTTC-GCTTTCT-----CGATAAAG-CCTTACAGATCAAAGAGATAGACAA 49397 Query 955 TTTCAGAACCTCGA--ATGCCGAAATTCAGCAAACGAAATTCCGTTTT-CGGTTGAT--- 1008 ||| ||| | | | ||| || | | || ||||| || |||| || || | Sbjct 49398 AATCA--ACCACCATCAAGCCAAAGATG-GAAAGCGAAAAGCCATTTTTCGCTTTACCAC 49454 Query 1009 -TGGTCTTCCGAAAACGACTATGTTTATGCCCTAAGTCACGTTAGACAACCCAAGTAGTC 1067 | || | | | |||||||||||||||| || |||||||||| ||||| | | Sbjct 49455 ATAGTTAT----ATTTGGCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAACC 49510 Query 1068 GCCCTGCATGGCGGCTGA-AATGGAACGTAGGCATGAACAGAACCGAAATCCCACGCGAC 1126 |||| || || | |||||| |||||||||||| |||||||||||| | ||| Sbjct 49511 ACCCTTGCCGGTGGTTATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGAC 49570 Query 1127 AACAACGTCCGCTGGGAGTGGATCAAATACCAACTCCGCGCCAGGGGATCGTCCCTGGCC 1186 | | | || ||||| ||||||||||||||||| || || | || |||| || || Sbjct 49571 CCAACCCTGCGATGGGAATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCA 49630 Query 1187 GAGGTGGCCCGCTCCCTCGACGTCTCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAACCC 1245 |||| || || ||||| | ||| | || ||||| ||||| |||| | | | Sbjct 49631 ATCTTGGCGCGTGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGC 49689 Query 1246 CTACCCTCGGGTAGAGCGCGCCATCGCTGCCGTGCTCGA--CCTCAGCCCCCTGGTGCTG 1303 || || || | ||||| || || || |||||| | | ||||| || | | || Sbjct 49690 ATATCCGCGAATGGAGCGAGCTATTGC--CCGTGCGCTAGGCCTCAAGCCAATCGACTTG 49747 Query 1304 TGGCCTGAGCGCTGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCGAATCGTTCGGAA 1363 ||||| || || ||| || ||| | || | || ||| | | || | ||| Sbjct 49748 TGGCCCGAACGTTGGAACGCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA 49807 Query 1364 ACCCTCAAGGCATATGACAGTGTCATATGCCGATCCGGGAAAAATACCAGATACGCTGAC 1423 | ||| ||| | || || ||| | | | | || |||| | || | Sbjct 49808 ---CACAACGCAACT-------TC-TA-GCCAA---GAGCATAAC-CCAGCTTA--TGCC 49849 Query 1424 CAAGCGCAGCGTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCA 1483 | || |||||| ||| | ||| || | |||||| ||| || || || || | Sbjct 49850 CTTCGACACCGTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTA 49909 Query 1484 CCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACG 1543 | | ||||||||| ||| || ||||||| || ||||| || || | ||||| | | Sbjct 49910 CGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATG 49969 Query 1544 CCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACG 1603 |||| |||||||| || ||| ||||||| |||||||| | || ||| || |||||||||| Sbjct 49970 CCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACG 50029 Query 1604 AGGTCGCCGCCCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACG 1663 | | | || |||||||| ||| | ||||||||||||||||| ||| ||||||| |||| Sbjct 50030 AAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACG 50089 Query 1664 CCTGGTCGAGTCCCGCCCGAGCTGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGG 1723 | |||||||| || |||||| | || || |||||||| ||||| | ||| | || || | Sbjct 50090 CGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTG 50149 Query 1724 AGGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCG 1783 | || || || || ||| | | ||| |||||||||| || || || ||||||| Sbjct 50150 AAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCG 50209 Query 1784 TGGCCTATGGCCGAGACGCACTGCTCGCCGAGCTGGGCCGCTTGGAGCG 1832 |||| || || || || ||||| ||| ||||| || || ||| ||| Sbjct 50210 TGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 50258 Score = 304 bits (336), Expect = 3e-78 Identities = 384/526 (73%), Gaps = 4/526 (1%) Strand=Plus/Plus Query 8553 ATGGAACCCAACAAAGCCCTGGAAAAAATCAAGAAACTGCTTCGCCTAGCAGGCAGCAGC 8612 ||||| | | ||||||||| || ||||||||||| ||||| ||||| |||| ||| Sbjct 56223 ATGGACCAGAGCAAAGCCCTAGACAAAATCAAGAAGCTGCTGCGCCTGGCAGCTAGCGAT 56282 Query 8613 AACCCACACGAAGCGGCGGCCGCCATGCGCCAGGCGCGGGCGATGATGGAGAAACACGGC 8672 ||||| |||||||| || || ||||||| |||||| || || ||||||| || || || Sbjct 56283 AACCCGCACGAAGCTGCCGCAGCCATGCACCAGGCCCGCGCCTTGATGGAAAAGTACCGC 56342 Query 8673 ATTGGCGAGAGCGATATT--GCTCTGGCTGACGTCACCGAACACGGCACCGGTAGCGGCT 8730 ||| ||| |||||| ||||| | || || |||| || | || ||||||| | Sbjct 56343 CTTGAAGAGTCGGATATTCAGCTCT--CCGAGGTATTCGAATGCGCCGCCCGTAGCGGTT 56400 Query 8731 CCAAACTGAAGCCCGCGCAGTGGGAAGCTAATCTCGGCGGCACCGTCGCGAAGGCATACT 8790 | || ||| || |||| |||||||| || || | || | ||| | |||| ||| Sbjct 56401 CAAAGATGACCCCGCCGCAATGGGAAGCCAACCTGGTGGGTGCAGTCACCCAGGCCTACG 56460 Query 8791 CCTGCAAGCTGTTCTTCGCGGCTGGCATCGGCCAATGGCGCTTCGTGGGCGAAATGGCCG 8850 ||||||| | | ||| ||| || |||||| ||||||| || | |||||| |||||| Sbjct 56461 CCTGCAAAGTCCTGTTCATGGCGGGTATCGGCGAATGGCGTTTTATCGGCGAACTGGCCG 56520 Query 8851 AGGTGGCCAGCTACACCATGGCGATCCTGCTGCGCCAGGTGCGCAAGGCCCGCCGCGACT 8910 || ||||||||||||||||||| | |||| ||||| || ||| || ||||||| |||| Sbjct 56521 AGCTGGCCAGCTACACCATGGCCTTGTTGCTACGCCAAGTCCGCCAGTCCCGCCGTGACT 56580 Query 8911 ACATCGCCACCGAGCTTAAGCGCTGCAAGGCCTCCACCAAAACCAAGCGTGGCGACCTGT 8970 ||| | || || | |||||||||||| | | ||||| |||||||||| |||| ||| Sbjct 56581 TCATTGGAACGCAGTTGAAGCGCTGCAAGCCTGCTACCAAGACCAAGCGTGCCGACGTGT 56640 Query 8971 TCTGCGACGCCTGGGTGTGGTCGGTGCGTAAGCAGGTCAATCAGTTCGCCGGGAGTGCGC 9030 |||| | ||||||||||| | ||||| ||||||| ||| || || | | Sbjct 56641 TCTGTGGCGCCTGGGTGTCAGCAGTGCGCCGACAGGTCATGGCGTTTGCTGGCAACGATG 56700 Query 9031 AGCCGTCGCTGGCAGCCGAGGCGTACATGGTGAAGCACCACCCCGA 9076 |||| || | |||| | | |||||||||| | |||||||| |||| Sbjct 56701 AGCCTTCACCGGCAACAGCGGCGTACATGCTTAAGCACCATTCCGA 56746 Score = 123 bits (136), Expect = 6e-24 Identities = 220/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9556 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9615 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57266 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57325 Query 9616 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9675 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 57326 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57385 Query 9676 CTTGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGG 9729 || | ||| | ||| |||||||| ||||||| | || ||| ||||| Sbjct 57386 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57442 Query 9730 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9789 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57443 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57502 Query 9790 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTC 9849 ||| ||| | ||| ||||| || |||||| |||||||| |||||||||| ||||| Sbjct 57503 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57562 Query 9850 GAGCGGGTCGAGTGGCTGGAC 9870 ||||| || || ||||| ||| Sbjct 57563 GAGCGAGTGGAATGGCTAGAC 57583 Score = 84.2 bits (92), Expect = 5e-12 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 5922 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGC 5981 || |||||| || |||| | ||||| | |||| |||||||| || || || | Sbjct 53731 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53790 Query 5982 AGCCAGACGAAGGCCGGCGAAGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6041 | | |||| |||||| || | |||||||||||||| || |||||||| | ||| Sbjct 53791 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53850 Query 6042 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTG 6101 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53851 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53910 Query 6102 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6152 | || ||||| || ||| ||| |||| | || ||| ||| | ||||| Sbjct 53911 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 53961 Score = 84.2 bits (92), Expect = 5e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 8472 CACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8531 |||| ||||||||||||| || | ||||| |||||||| | |||||| | | ||||| Sbjct 55887 CACTAAGCGAAACCGCCCTGGTCAT-CCGGGGTGGTCTGCCAGGCGTGGTTGCCTGGTAC 55945 Query 8532 TGACGAGCAGCCGAGGAATACATGGA 8557 |||||||||||||||||| | ||||| Sbjct 55946 TGACGAGCAGCCGAGGAACAAATGGA 55971 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 8477 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGACG 8536 ||||||| ||||||||| | | ||| |||||||||||||||||| |||||||||||| | Sbjct 56894 AGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 56952 Query 8537 AGCAGCC 8543 ||||||| Sbjct 56953 AGCAGCC 56959 >seq9928 Length=455 Score = 102 bits (112), Expect = 2e-17 Identities = 196/289 (68%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 13726 GACTATGAGTATTTCGCCCGGACCTACTTCCCGCACTACGTGAAGCGCGGTAACGCGCTG 13785 ||||| |||| ||| || ||||| ||||| |||||||||||| ||| ||||| Sbjct 167 GACTACGAGTTCTTCTGTCGCACCTATTTCCCTCACTACGTGAAGAGCGAGGCATCGCTG 226 Query 13786 CTCCACGACTACCTCTACAAGCGGTTGCCCGAGCTGGTGGACCACCCGGACGGCCAGCAC 13845 |||| || ||||| | |||||| ||||| || || || || |||| | Sbjct 227 TTCCATCGCTGGTTCTACGACACCGTGCCCGGCCTGGTCGATCAACCCACGGGGCAGCTC 286 Query 13846 GAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGTGAGCCAGATATTCGTG 13905 | || |||| || |||||| | || ||||||||||| | | ||| | ||| | Sbjct 287 ATCGAGATCTCGGCCCCACGTGGTGAGGCGAAGTCCACCCTCGGTACGCAGCTCTTCACG 346 Query 13906 ATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATCATGGATGCCTTCGAA 13965 | ||||| || | |||| ||||||| | | | | | | ||||| |||||| Sbjct 347 CTTTGGTGTGTGGTGACCGAGCGCAAGCGATTCATTCCGCTGGTGATGGACAGCTTCGAC 406 Query 13966 CAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTTCAACC 14014 |||||||| || ||| ||||||| |||||| ||||||||| ||||| Sbjct 407 CAGGCCGCGACCATGCTGGAGGCCGTCAAGGTCGAGCTGGAGAGCAACC 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118562678635170