Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq45 150 4e-32 seq833 98.7 2e-16 seq685 95.1 3e-15 >seq45 Length=185997 Score = 150 bits (166), Expect = 4e-32 Identities = 222/312 (71%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 25782 CGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGG--TTCTGCCACTTGCGCGT 25839 |||| || || ||||| ||||| | ||||| ||| | || | ||||| ||| || Sbjct 40339 CGACCACGATTTCAGTGGTGTAACG--CTTGA---TGCCGTCTTTTTCCCACTCGCGGGT 40285 Query 25840 GCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTC 25899 ||| ||||||||| ||||| | || || |||||||| ||| || ||||| | ||| Sbjct 40284 TTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCTC 40225 Query 25900 TGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGT 25959 ||| | ||| ||| | | | ||||||||||| || ||||| || ||| ||| || || Sbjct 40224 TGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGT 40165 Query 25960 CTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTT 26019 |||||||| | |||| || ||||| || | || | || | ||||||| ||||||| Sbjct 40164 TTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTT 40105 Query 26020 AGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAAT 26079 |||| || | |||||| || |||||||| | | ||||| | || || ||||||| Sbjct 40104 CGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATGTACCGACCAATATGACTTTGTTAAC 40045 Query 26080 TCCGCGTGCCAT 26091 || || ||||| Sbjct 40044 CCCACGGGCCAT 40033 >seq833 Length=8904 Score = 98.7 bits (108), Expect = 2e-16 Identities = 180/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| || || | | ||| ||||| ||||| | || || ||||| || ||||| Sbjct 8502 CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTC 8443 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 || || | || || | ||||| | || |||||||||||| || || ||||| || Sbjct 8442 ACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGAC 8383 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 ||| || || |||||||| | |||||||||| || |||| ||| | ||| | || Sbjct 8382 TTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTAC 8323 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 || ||||||| || | || | | ||| || || || || || |||| || | ||| Sbjct 8322 TGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGAT 8263 Query 26068 TACCTTGTTAATTCCGCGTGCCAT 26091 || || || | ||||| ||||| Sbjct 8262 CACTTTATTTACGCCGCGAGCCAT 8239 >seq685 Length=77197 Score = 95.1 bits (104), Expect = 3e-15 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| ||| ||||| | ||||||| | ||| || ||||| || ||||| Sbjct 10811 CCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATACTC 10752 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 || || | || || | ||| ||| | ||||| || ||||||||||| || || Sbjct 10751 ACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTG 10692 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | |||| || |||||||| ||||| | || |||||||| | | ||| || | || Sbjct 10691 CTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTAC 10632 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 |||| | ||||| || | || | ||||||||||| ||| ||||||||| | || Sbjct 10631 GGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAAT 10572 Query 26068 TACCTTGTTAATTCCGCGTGCCATTGCGCTCCTCC 26102 || ||||| | || |||||||| | | | |||| Sbjct 10571 CACTTTGTTGACGCCTCGTGCCATGGTGTTGCTCC 10537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123640234049640