Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq1130 120 8e-23 >seq1130 Length=54118 Score = 120 bits (132), Expect = 8e-23 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 26838 GAAGATGCTCGGGCACGGTAGAGACCAGTCGATGCACTCGGCGGCAGCGCGCCACGGCTT 26897 ||| ||||| || || || | |||||||||||||| |||||||| | ||| || || Sbjct 22997 GAAAATGCTTGGACAAGGGATGGACCAGTCGATGCAATCGGCGGCCGTCAACCAAGGTTT 23056 Query 26898 GAG-CCTGCCCTTGCGGACCGCCGGGCTTTTCGGATCTCCATGCGTCGGTGCAGGCCAGA 26956 || || | | ||| ||| || ||||| | |||||||||||| | |||||| Sbjct 23057 CAGTCCAGACTGGGCGAACC-CCTTCAACTTCGGGTTGCCATGCGTCGGTACCGGCCAG- 23114 Query 26957 CGATCCGGC-GGCCATCGCAGCGCGCCACCAGAAACAGGCGCTTGCGGATCGTAGGGGCG 27015 ||| | | |||| |||| |||||| | || ||||||||| |||||||| || |||| | Sbjct 23115 CGAATGGCCAGGCCGTCGCGGCGCGCGAACACAAACAGGCGTTTGCGGATAGTCGGGGTG 23174 Query 27016 CCGAAGTCGCAGGCGCGCA 27034 ||||||||||||||||||| Sbjct 23175 CCGAAGTCGCAGGCGCGCA 23193 Score = 95.1 bits (104), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 27382 GTCTCGGGGTGGTTGGCTGCATGCAGCGCCAGCGCCGCGGCAGAGTGGTTGATGGCGACA 27441 || || || ||||||||||||||||| ||||||||| || | |||||||||||| ||| Sbjct 23616 GTATCCGGATGGTTGGCTGCATGCAGGGCCAGCGCCTCGCCGTTGTGGTTGATGGCCACA 23675 Query 27442 TCGGGCGAGCGGCCAAGGGCCTGCTCGATGCCGGTCGAGGCGCCGCCGCCTCCGGCAAAA 27501 ||| | ||| || | |||||||| || || || || ||||| || |||||||| Sbjct 23676 TCGACGGGGCGACCGAATGCCTGCTCAATACCCTCAGATGCCCCGCCACCACCGGCAAAG 23735 Query 27502 CAGTCGATGA 27511 |||||||| Sbjct 23736 TTGTCGATGA 23745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129421672382310