Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq98 118 5e-22 >seq98 Length=772300 Score = 118 bits (130), Expect = 5e-22 Identities = 324/487 (67%), Gaps = 12/487 (2%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTGGAAT 25950 |||||||||||| ||| || | |||| || || ||||| || || | || | Sbjct 408871 GGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTC-ATGAACAGGTCACATAC 408929 Query 25951 CCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAG 26010 ||| | ||||| ||||||||||| || | | ||||||||| || || || || || Sbjct 408930 CCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTTTTTACGCAG 408989 Query 26011 ATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTT 26070 || | ||| | | ||||| |||||||| || | || || |||||| |||||| Sbjct 408990 GTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTT 409049 Query 26071 TCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGG 26130 | ||| |||||||| || || || || | || || || || || ||||||||||| || Sbjct 409050 ACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGG 409109 Query 26131 AACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 || ||||| ||| | |||||||| | | ||| | ||||| || | | || | Sbjct 409110 TAC-AATCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGT 409168 Query 26190 CGT-GAGCATGAATACCGATTCCACCAGCCCATTTTGAAA---TAGCTGCACAATCTGAA 26245 | || | || ||| || ||||| || | || ||||| |||| | | | || Sbjct 409169 TATGGATGCTTAA-ACCAATACCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAA 409227 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 |||||| ||||||||| || || || | | ||| | |||||| || ||||| Sbjct 409228 ---GTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGAC 409284 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCT 26365 | ||| | | || || ||| ||||||||| || || || ||||| ||| | | | Sbjct 409285 ATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCATGCGTAAACCAGCGC 409344 Query 26366 TCACTCA 26372 ||||||| Sbjct 409345 TCACTCA 409351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252996809630375