Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq532 170 2e-37 seq536 86.0 7e-12 >seq532 Length=120000 Score = 170 bits (188), Expect = 2e-37 Identities = 272/386 (70%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 || |||||||| ||||| |||||||| | ||||||||| ||||| || |||||||| || Sbjct 23590 AGGTGTTTTGCAACACCGATAGGACCCATGCCAGGACCACCACCACCGTGTGGAATGCAA 23649 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAG 138289 || || || || | || || ||||| || || ||||| ||| | | || | | || Sbjct 23650 AAAGTTTTGTGCAGGTTCAGGTGACAGACGTCAGCACCGATA-TGTCCGGGACTGGTTAA 23708 Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 |||||| |||||||| | |||||||||||| | ||| ||||| || || || ||||| | Sbjct 23709 ACCTACTTGTGCATTCATATTTGCACCATCCATATAAACCTGTCCTCCGTTTTCATGGAT 23768 Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAAT 138409 ||| || || || | | ||| || ||| || |||||||| || || || || || | Sbjct 23769 GATGTTGCAGATGTCAATAATGCTTTCTTCGAACACACCATGGGTAGAAGGGTAAGTGAC 23828 Query 138410 CATAATACATGAGAGTTCAAATGTAT--TCATGATTGCTTTCTTCTCTAGATCTTTGATG 138467 ||| | ||| || || ||| | ||| || || ||||| | || || | | Sbjct 23829 CATTAAACAGGAAAGCTCATTTTTATGCTCCTG--GGCTTTAGCTTTAAGGTCCTCTACA 23886 Query 138468 TCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCA 138527 ||||| || || | ||| | | || || |||| ||||||||| ||||| ||||| Sbjct 23887 TCTATATTTCCGTTTTCAAGAGATTTAACGATCACAATTTTCATTCCGGCCATTGCTGCA 23946 Query 138528 CTAGCAGGATTAGTTCCATGTGCTGA 138553 ||| ||||| |||||||| || || Sbjct 23947 GAAGCCGGATTGGTTCCATGAGCAGA 23972 >seq536 Length=144094 Score = 86.0 bits (94), Expect = 7e-12 Identities = 325/502 (65%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 || || || || |||| || || || | || ||||| || || || || ||||||||| Sbjct 13981 AGGTGCTTGGCAACACAGATTGGGCCCATACCGGGACCACCTCCACCGTGGGGAATACAG 14040 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA 138290 || ||||| || || || ||||| || ||||| |||||| ||||| ||| ||| Sbjct 14041 AAGGTCTTGTGCAAGTTGAGATGGCACACATCAGCACCAATGTCACCTGGGCGGCAGAGA 14100 Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACG 138350 || || || || || | || || || || | || || ||||| |||| | | || | | Sbjct 14101 CCGACTTGGGCGTTCATGTTGGCGCCGTCCATGTAGACTTGACCGCCATAGGCGTGGATG 14160 Query 138351 ATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATC 138410 | || || |||| || ||||| || || || |||||||| || |||||| Sbjct 14161 AGCTGGCACATCTCCTTGGCACCCTCCTCAAACACTCCGTGGGTCGATGGGTAGGTAATC 14220 Query 138411 ATAA----TACATGAGAGTTCAAATGTA-TTCATGATTGCTTTCTTCTCTAGATC--TTT 138463 || | || | | || | |||| ||| | || || | || || || Sbjct 14221 ATGAGTGCGGCAAGGGTGTCC--TTGTACTTCTCG---GCCTTGATGCGGAGGTCGGCTT 14275 Query 138464 GATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGAC 138523 | ||| | ||| || || ||||| |||| | || || ||||| |||||||| Sbjct 14276 G--GTCGACGTTTCCGAGCTCGTCACAGGCGACAACGACGACCTTCATGTTGGCCATGAC 14333 Query 138524 TGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATC 138583 |||| ||| || || ||||| || || || ||| || ||||| | || | || Sbjct 14334 TGCAGAAGCTGGGTTGGTTCCGTGGGCAGAGGTTGGGATGAGACAAATGTTACGTTGTGA 14393 Query 138584 ATCTCCTG-ATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTG 138642 | || | | |||||| | ||| | | || | | ||||| |||||||| || |||| Sbjct 14394 TTGGCCAGTAGCCTTGA-GGTATTCACGAATGACCATGAGTCCAGCATACTCTCCTTGTG 14452 Query 138643 ATCCTGCGTTAGGTTGTAATGA 138664 | || ||||| ||||| | ||| Sbjct 14453 AACCGGCGTTTGGTTGGAGTGA 14474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578897039092600