Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq160 192 8e-44 seq509 127 3e-24 seq1400 95.1 2e-14 >seq160 Length=487619 Score = 192 bits (212), Expect = 8e-44 Identities = 527/798 (66%), Gaps = 36/798 (5%) Strand=Plus/Minus Query 47755 TCCTCAACAAACTGACGGACAGAATATTGAT--TTCCTGTGGCAATAACAAAATCATCAG 47812 |||||| |||| | |||||||| || || | | ||||| ||||| ||||| || || | Sbjct 249355 TCCTCA-CAAAATCACGGACAG--TAGTGGTAATCCCTGTTGCAATCACAAAGTCTTCTG 249299 Query 47813 GTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGT 47872 || ||| || ||||| || |||||||| || |||| ||||||| | ||||||||||||| Sbjct 249298 CTTTTTCCTGCTGAAGGATCAACCACATGGCTTCGATATAATCTTTAGCATGTCCCCAGT 249239 Query 47873 CACGAAGTGC--ATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGC 47930 |||| | || || ||| || |||| ||||||||| | || || | ||| Sbjct 249238 CACGCTGCGCTGAT-AAG-TTACCTAAATATAAACAATTCTGAAGTCCCAAGGCAATTTT 249181 Query 47931 TTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATG 47990 | ||| | ||||| || || || ||||||||||| || | | || |||||| Sbjct 249180 CGCTGCTGCACGGGTAATTTTTCGGGTCACAAAAGTTTCTCCTCTTAAAGGGCTTTCATG 249121 Query 47991 ATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACT 48048 ||| || | ||| ||| |||| || ||||| || | ||||||||| || | || Sbjct 249120 ATTGAATAAAATCCCATTACAAGCGTACATGTTATAAGCTTCACGATAATTTACCGTA-- 249063 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 |||||||| |||| | ||| || || |||||||||| | ||||| || || || || Sbjct 249062 ATCCAGTAGGCATACATTTTGGCCACTGCATAAGGAGACCTGGGATAAAACGGCGTCGTT 249003 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATA 48168 || | || ||| | | |||||| |||||| | |||| || || || ||||| || Sbjct 249002 TCACTTTGGGGAACCGCCTGCACCAAACCATACAATTCAGAAGTAGAGGCCTGATATATT 248943 Query 48169 CGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATG 48228 | | | ||||| | | | || | || || || | || | || || || Sbjct 248942 CTGGTTTTTTTCTCCATACCCAAAATCCGTATGGCTTCCAGGAGCCTTAATGTCCCGATA 248883 Query 48229 GCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCC 48288 |||| | | | ||||| || ||||| || || || | ||||| ||| || Sbjct 248882 CCATCCGCATTCGCCGTATATTCCGGCATTTCGAAACTCACATGAACATGGCTCATGGCT 248823 Query 48289 CCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAG 48348 | || |||||||| || ||||| || | || |||| | | ||| || ||||| Sbjct 248822 GCCAGGTTATAAATTTCGTCTGGCTGGGTTTCTTGTATAATGCGGATTAAGTTGGTAGAA 248763 Query 48349 TCTGTTAAGTCTCCATAATGCA----------------ATTTTAAT--TGATC---ATAA 48387 || || | || ||| |||||| ||||| || || || ||| Sbjct 248762 TCGGTCAGATCCCCAAAATGCAGTTTAAAATTCACGCCATTTTCATGCTGGTCCTGATAC 248703 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 | |||||||| | || |||||||| ||||||| || | | |||||||| | Sbjct 248702 AAATGATCAATACGATCTGTATTAAACAAAGAAGATCGTCTTTTTAGTCCATGAACAAAA 248643 Query 48448 TA-CCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGT 48506 || || ||||||| ||||| |||||| | || | |||||| || || || | || || Sbjct 248642 TATCCTTTTTTCAATAAGAA-TTCTGCAAGATAGGCACCATCCTGACCCGTTACCCCTGT 248584 Query 48507 GATTAAAGCAACTTTCAT 48524 ||||||||| || ||||| Sbjct 248583 GATTAAAGCTACCTTCAT 248566 >seq509 Length=66972 Score = 127 bits (140), Expect = 3e-24 Identities = 220/314 (70%), Gaps = 18/314 (6%) Strand=Plus/Plus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 ||||||||||||||||||||||||||| ||||| || | ||||||||||| | ||| | Sbjct 10233 ACCATAAGGAGAACGTGGATAGAAAGGAGTGGTTTCACTTTGTGGAGTCTCACGTACCAT 10292 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAA---- 48190 || || |||||| ||| |||||||||||| | | | ||| | |||| | Sbjct 10293 TCCGTAGAGTTCAGAGGTCGATGCTTGATAG------AACTTGACTTGCTTCTCGAGACC 10346 Query 48191 GCA--AACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATC--TGTCTGACCAGTA 48246 ||| | | || || || | | | || || | |||| ||| | |||| Sbjct 10347 GCATGATCTGATGGCGTCCAAGAGACGGAGACAACCGACACCATCGACGTCGG--CAGTG 10404 Query 48247 TACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC- 48305 ||||| | ||| ||||| || |||||||| |||||||| || || ||||| || ||||| Sbjct 10405 TACTCTGACATATCAAAGGACACCTTTACGTGACTCTGAGCACCGAGATTGTAGATCTCT 10464 Query 48306 ATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATA 48365 | |||| | | ||| |||| | || | ||| ||||||||||||| |||||||| Sbjct 10465 GTTGGGTTTACACGACTG-ATAATACCAACGAGATTAGTAGAGTCTGTTAGATCTCCATA 10523 Query 48366 ATGCAATTTTAATT 48379 ||| || | ||||| Sbjct 10524 ATGTAAATGTAATT 10537 Score = 100 bits (110), Expect = 4e-16 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 47758 TCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCT 47817 || |||||| ||| || || || || || |||||||| ||||| || || | | | Sbjct 9847 TCGACAAACAAACGAACCGAGTAGGTCTTGCCAGTGGCAATGACAAAGTCCTCTGCCTTT 9906 Query 47818 TCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGA 47877 || ||||| ||||| | |||||| ||||||||||| || | ||| || ||||| ||||| Sbjct 9907 TCCTGTTGGAGCATCAGCCACATGGCCTCGACATAGTCGCGGGCGTGACCCCAATCACGT 9966 Query 47878 AGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCA-GAGATTGCTTTTAA 47936 | |||| | ||||| ||||| | || | | || | || | |||| || | Sbjct 9967 TGGGCATTGATGTTTCCAAGATACATGATCTCGT-CGTATCCACATGCGATT-CTAGCCA 10024 Query 47937 TG-CTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAA 47995 | | || ||||| ||||| ||||| ||| || | | ||| || || || |||| Sbjct 10025 CGAAACGAGTGATCTTGCGAGTGACAAAGGTTGGTCCTCTACGTGGTGACTCGTGGTTAA 10084 Query 47996 AAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT 48041 | | |||||| |||| ||| |||| | || | |||||||||||| Sbjct 10085 ACAAGATACCATTACAAGCAAACATATCATAGGCTTCACGATAGTT 10130 >seq1400 Length=5517 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 2175 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 2116 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 2115 TGAGCTAATCCCCC 2102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665377896886600