Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq404 188 9e-43 seq509 93.3 5e-14 seq689 91.5 2e-13 seq371 87.8 2e-12 >seq404 Length=78127 Score = 188 bits (208), Expect = 9e-43 Identities = 589/904 (65%), Gaps = 30/904 (3%) Strand=Plus/Minus Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 |||| | | || |||| || || ||| ||||| ||||||| ||| | | || |||| Sbjct 49841 TCGACGACGTCATCATTGAGCGTCCCCAGCACATGCTCATGCGTGTCTCTCTTGGTATCC 49782 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 |||| | |||||||| ||| | | ||||| || || || | ||||| | || | Sbjct 49781 ACGGCGCCGACATTGACGCTGCCATCGAGACCTATGAGCAGCTTTCCCAGCGCTACTTTA 49722 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCT 75368 ||||| || ||||||||||| || | || || || || ||||| |||| Sbjct 49721 CCCACGCCACCCCAACCCTCTTTAACTCGGGCACCTGCTCGCCACAAATGTCGTCGTGCT 49662 Query 75369 TCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 75428 ||||| || | ||||| ||||| ||| | |||||||| | || || | | | || | Sbjct 49661 TCCTTGTCCAGATGAAGGATGACTCGATCGATGGTATCTACGATACCCTCAAGCAATGCG 49602 Query 75429 CGCAAATCTCAAAGTGGGCTGGGGGTATTGG----GATGCACATCCATGATGTGAGA-GC 75483 | | ||||| |||| ||| || || ||||| | || || || ||| | | || Sbjct 49601 CCCTCATCTCCAAGTCGGCCGGAGGCATTGGTCTCGCTGTCCA--CAAGATCCGCGCTGC 49544 Query 75484 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 75543 | | || | || || || || || ||| ||| | ||| | |||| |||||||| Sbjct 49543 CCGTTCATAT---ATCCGCGGCACCAACGGTACATCCAACGGTCTCGTTCCCATGCTTCG 49487 Query 75544 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCAT 75600 ||| || |||| ||| || ||||| || | |||| || | |||||||| || | Sbjct 49486 CGTGTTCAACGACACTGCTCGCTACGTCGACCAAGGAGGTGGCAAGCGCAAGGGAGCCTT 49427 Query 75601 CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAA 75660 || ||||| | || |||||||| |||||| |||||||||||||||| | || || Sbjct 49426 TGCCATCTACCTCGAGCCATGGCACGCCGATGTCATGGAGTTCCTTGACCTTCGCAAGAA 49367 Query 75661 CCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 ||| || | |||||| || | || ||||||| |||| ||| | | || || Sbjct 49366 CCACGGAAAGGAAGAGATGCGTGCCCGTGACCTCTTTTACGCCCTCTGGGTATCCGATCT 49307 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 || ||| |||| || |||| | | ||| | || || ||||| || |||| || Sbjct 49306 CTTTATGGAGCGTGTCGAGGCCAACGCCGAGTGGACACTCTTTTGTCCCAACGAGGCCCC 49247 Query 75781 AGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG--- 75836 ||||||| | || || | ||| || ||||| || |||||||| || || | Sbjct 49246 AGGTCTCGCTGATTGCTG-GGGAGACGAGTTCCGCGCTCTCTACACCCGCTACGAGGCCA 49188 Query 75837 ----AGG--AGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTC 75890 ||| ||| | ||| ||| | ||| ||| | ||| | ||| Sbjct 49187 CCCCAGGTCTCGGTCG---CAA---GACCATCAAGGCCCAAGATCTCTGGTTCTCCATTA 49134 Query 75891 TCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGA 75950 || | || |||| |||||||| || |||||||| || |||||||| || || || | Sbjct 49133 TCGAGTCGCAGATTGAGACTGGCACCCCATATATCCTCTACAAGGACGCCTGCAATGCCA 49074 Query 75951 AGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAG 76010 || |||||| ||||| | || || ||| || |||| || || ||||| || ||| | Sbjct 49073 AGTCAAACCAACAGAATCTCGGCACCATCCAGTGCTCCAACCTCTGCACAGAGATTGTCC 49014 Query 76011 AGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 | ||||| | || || ||| || ||||| | || || || ||||| || |||| Sbjct 49013 AATACACCTCTCCCGACGAAGTGGCCGTGTGCAACCTCGCCTCGATTGCCCTACCCAAGT 48954 Query 76071 ATGT 76074 ||| Sbjct 48953 TTGT 48950 >seq509 Length=66972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 210/310 (68%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 177538 CCAACCTCTTTGAAGCACATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCG 177597 |||| ||| ||||| || |||| |||||| | || |||| |||| || || || Sbjct 9826 CCAATCTCCTTGAATGACTTTTCGACAAACAAACGAACCGAGTAGGTCTTGCCAGTGGCA 9885 Query 177598 ACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCC 177657 | ||| | || || |||| ||| ||||| ||||| ||||||||||| || |||||||| Sbjct 9886 ATGACAAAGTCCTCTGCCTTTTCCTGTTGGAGCATCAGCCACATGGCCTCGACATAGTCG 9945 Query 177658 TTGGCATGACCCCAGTCTC--TGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTC-TC-T 177713 ||| |||||||| || | ||| || |||| ||| || || | | || ||| || | Sbjct 9946 CGGGCGTGACCCCAATCACGTTGG--GCATTGATGTTTCCAAGATACATGATCTCGTCGT 10003 Query 177714 CTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACC 177773 || | | | ||| ||| | ||| ||||| ||||||||| | || Sbjct 10004 ATCCACAT--GCGATTCTAGCCACGAAACGAGTGATCTTGCGAGTGACAAAGGTTGGTCC 10061 Query 177774 TCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTC 177833 || | ||||| |||||||| || | ||| || || ||| ||||| |||||| ||| Sbjct 10062 TCTACGTGGTGACTCGTGGTTAAACAAGATACCATTACAAGCAAACATATCATAGGCTTC 10121 Query 177834 TCGGTAATTT 177843 || || ||| Sbjct 10122 ACGATAGTTT 10131 >seq689 Length=46727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 64944 ATTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCA 65003 ||| || || | ||| |||||| || | ||||||| | || || | ||||| | Sbjct 18031 ATTAATCGATACATATATTAAGAATCCAGTTGAAAAGGCCAATTTGTTCAATGCCATAGA 18090 Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC 65063 ||| | |||||| | |||||||||| | |||||| ||| |||| | | |||| || Sbjct 18091 GACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGATGGAT---CTCAAATTC 18147 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 || || |||||||| | | |||||||| || ||||||||||| ||||| || Sbjct 18148 CAAGTCGTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTTTTCTCTGG 18207 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 ||||| | || | |||| | |||||||| || | |||||||| | ||| || Sbjct 18208 TAGTTTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTC 18267 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || | || ||| || || ||| | ||| || |||||| Sbjct 18268 CAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCC 18313 >seq371 Length=37358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 277/423 (65%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||||||| || ||| |||| | || ||||| || || |||||| | Sbjct 20135 GGTGCCAAGATCCCCAAGGGTGCCATTCTTGTTGGCCCTCCAGGCACTGGCAAGACCTTG 20194 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||| |||| || ||||| || || || ||| || ||||| | | Sbjct 20195 CTCGCCAAGGCCACTGCTGGTGAGTCTGGCGTGCCCTTCTTCACCATCTCTGGATCGGAT 20254 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || | ||||||||||| ||||| ||| | | || || ||||||||| || || Sbjct 20255 TTCATCGAGATGTTTGTCGGTGTTGGTCCATCGCGTGTCCGTGATCTCTTTAAAGAGGCT 20314 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGT-GGGCAAGCAACG 175514 ||||| ||| |||| || | ||||| || ||||||||||| || || | ||| | Sbjct 20315 CGCGAGAATGCTCCATCAATCATATTCATCGACGAGATTGATGCCGTCGGTCGTTCAA-G 20373 Query 175515 CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | ||| || | ||| |||||||| | || | ||| | |||||||| | Sbjct 20374 ATCCCGTGGCGG-CTTCCA--CAATGACGAACGCGAGAATACACTCAATCAACTCTTGGT 20430 Query 175575 CGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCG 175631 ||||||||||| || | ||| || || |||| || |||| | || ||||| Sbjct 20431 AGAGATGGATGGATTCGGTAGCAACGA---AGGTGTTGTTGTGTTTGCCGGTACCAATCG 20487 Query 175632 CGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGT 175691 ||| | || || | || ||||| || || ||| | || |||||| ||||| | || Sbjct 20488 TCCCGATGTACTCGACAATGCTCTCCTGCGGCCCGGTAGATTCGATCGCCAGATCTATGT 20547 Query 175692 GGG 175694 || Sbjct 20548 TGG 20550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596465163034400