Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1400 89.7 6e-13 seq528 86.0 7e-12 seq28 84.2 2e-11 >seq1400 Length=5517 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2102 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2161 Query 18068 TCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 2162 TCCGTTATTCTCCA 2175 >seq528 Length=126797 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 |||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 34748 GGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGAC 34689 Query 18068 TCCGCTATTCTCCA 18081 |||||||||||||| Sbjct 34688 TCCGCTATTCTCCA 34675 >seq28 Length=112092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 161245 GTAGCTCAGC-GGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCTGC 161303 |||||||||| |||||||||| ||||||||||||||| ||||||||||||| | |||||| Sbjct 21376 GTAGCTCAGCTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCGCAGGTTCGAGTCCTGC 21317 Query 161304 C 161304 | Sbjct 21316 C 21316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561149746522000