Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq593 123 4e-23 seq1623 113 8e-20 seq355 89.7 9e-13 seq456 87.8 3e-12 seq48 87.8 3e-12 >seq593 Length=58250 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | ||||| |||| ||| | |||| || || ||| || Sbjct 29612 ATTTGCATACCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTG 29553 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || | ||| |||||||| ||||| | ||| |||||| Sbjct 29552 TAGTCGGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGA 29493 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || ||||| || | ||| || || || || Sbjct 29492 TCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGAT 29433 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||| | ||| ||||| || || || || || ||||||||||||||||| Sbjct 29432 CCCTCGACTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || ||||||| ||| | |||| ||| || ||| || Sbjct 29156 ATTTGCATACCTCCACGAAGGCGGAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTG 29097 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||| ||||||||||| || | | |||||| Sbjct 29096 TAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGA 29037 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || ||||| |||| || || || || || Sbjct 29036 TCGGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTATCGATGGTGTCAGAT 28977 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | || || || ||||| || || || |||||||| |||||||| Sbjct 28976 CCCTCAACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || ||||||| || | |||| || || ||| || Sbjct 29384 ATTTGCATACCTCCACGAAGGCGGAGTACCAAGTGAAGAGTAGATTCCTTTTGAATGTTG 29325 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||| ||||||||||| || | | |||||| Sbjct 29324 TAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGA 29265 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || ||||| || | ||| || || || || Sbjct 29264 TCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGAT 29205 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || || || || || || | || |||||||| |||||||| Sbjct 29204 CCCTCAACTTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | || | ||| || ||| || |||||||| | || | | | Sbjct 29819 CGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCA 29760 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||||||||| || | | |||||||| || || ||||| || || Sbjct 29759 TCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTG 29700 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || ||||| || | ||| || || || || ||| || || | || ||| Sbjct 29699 TCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATA 29640 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || |||||||| |||||||| Sbjct 29639 GTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 >seq1623 Length=5066 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | || || |||| ||| | |||| ||| || || || Sbjct 92 AATTTGCATACCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTT 151 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | || | | ||| || | ||| ||||||||||| || | | ||||| Sbjct 152 GTAGTCGGAAAGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTG 211 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || ||||| || ||||| |||| || || ||||| || Sbjct 212 ATCGGGGGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGA 271 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | || || || ||||| || || ||||| ||||| |||||||| Sbjct 272 GCCCTCAACCTCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq355 Length=81473 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | | ||| || | ||| ||||||||||| || | | Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || |||||||| || ||||| || ||||| || | || ||||| Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATAGTG 81354 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || || ||||| || || || || || |||| || |||||||| |||||| Sbjct 81353 TCAGATCCTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTGC 81294 Query 193359 AT 193360 || Sbjct 81293 AT 81292 >seq456 Length=67341 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| ||||||||||| || || | || ||||| || || ||||| || || Sbjct 21428 TCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTG 21487 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| ||| || || || |||||| || || || || Sbjct 21488 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATG 21547 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || || ||||||| || || ||||| || ||||| || || Sbjct 21548 GTCTTTCCTGTTAAAGTCTTAACAAAGATCTGCATGTTGTT 21588 >seq48 Length=44992 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||| || | |||| ||| || ||| ||||||||||||| || | Sbjct 22390 CGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCG 22331 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||||||||| || | | || ||||| || || || || || || Sbjct 22330 TCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTG 22271 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || ||||| |||| ||| || ||||| || ||| || || || || || Sbjct 22270 TCTTGAATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATG 22211 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | || || ||||| || |||||| Sbjct 22210 GTCTTTCCAGTCAATGTCTTGACAAAGATCTGCATT 22175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899496904251600