Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq48 98.7 1e-15 seq593 96.9 5e-15 seq420 86.0 9e-12 >seq48 Length=44992 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||||||||||| || || || ||| | || ||||| | ||| Sbjct 21948 ATGCAAATTTTCGTAAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGAGGGATCT 22007 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || | || || ||||| || ||||| || || || || ||| Sbjct 22008 GATACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 22067 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| ||||| ||| | | ||| |||| || || || Sbjct 22068 CAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTATCCGACTACAAC 22127 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| || ||| | || ||||| || || Sbjct 22128 ATACAAAAGGAGTCTACTCTTCACTTGGT 22156 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || |||||||||||||| || || ||| | || ||||| | || Sbjct 22175 AATGCAGATCTTTGTCAAGACATTGACTGGAAAGACCATCACACTGGAGGTCGAGGGATC 22234 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || || | || || ||||| || || ||||| || || || || Sbjct 22235 TGATACCATCGACAATGTAAAGACCAAGATTCAAGACAAGGAGGGCATTCCACCCGATCA 22294 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | |||||| ||||| ||||| || | | ||| |||| || ||||| Sbjct 22295 GCAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTATCCGACTATAA 22354 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || ||||| || || Sbjct 22355 CAT-TCAAAAGGAGTCTACTCTTCACTTGGT 22384 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| || ||||| || || |||||||| | || Sbjct 22404 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCA 22463 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || | || || ||||| || ||||| || || || || ||| Sbjct 22464 GACACCATCGATAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 22523 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | |||||| ||||||||||| ||| | || || || || || || Sbjct 22524 CAAAGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTACAAC 22583 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || |||||||| || Sbjct 22584 AT-TCAAAAGGAGTCTACTCTTCATTTGGT 22612 >seq593 Length=58250 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| || |||||||| || |||||||| | ||| Sbjct 29377 ATGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCT 29436 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || | || || ||||| || ||||| || || || || ||| Sbjct 29437 GACACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAA 29496 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| | |||| ||||| ||||| ||||| ||| Sbjct 29497 CAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGAT 29532 >seq420 Length=40905 Score = 86.0 bits (94), Expect = 9e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || ||||||||||| || || ||| | || ||||||| || Sbjct 14002 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATCACACTGGAGGTCGAAGGATC 13943 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || || | || || ||||| || ||||| || || || || || Sbjct 13942 AGACACCATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 13883 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | |||||| ||||| ||||| ||| | ||| |||| || || || Sbjct 13882 ACAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGCACTCTATCCGACTACAA 13823 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || ||||| || || Sbjct 13822 CAT-TCAAAAGGAGTCCACTCTTCACTTGGT 13793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||||||||||| || || || ||| | || ||||| | || Sbjct 14230 AATGCAAATCTTTGTCAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGAGGGCTC 14171 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || | || || ||||| || ||||| || || || || || Sbjct 14170 AGACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 14111 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||| | || | ||| || ||||| || || || Sbjct 14110 ACAAAGACTCATCTTTGCTGGAAAGCAACTAGAGGA 14075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731743876658000