Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq420 102 2e-16 seq355 86.0 1e-11 >seq420 Length=40905 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCG 192377 ||||| | ||| || || | ||| | ||| ||| || || || || || || | || || Sbjct 14012 AGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCGGAAAGGGTACG 14070 Query 192378 TTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTC 192437 | | || || | ||| || ||||||||||| | ||| |||||||| ||||| |||||||| Sbjct 14071 TCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTC 14130 Query 192438 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGT 192497 || ||||| || || | || || || || | ||||| || || || || || Sbjct 14131 CTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGT 14190 Query 192498 AATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || ||||| ||||| || | ||| || |||||| Sbjct 14191 GATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 14230 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || ||||| | ||||| |||||| || || || ||||| | || || Sbjct 13328 AGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGG 13387 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||| || ||||||||||||| || || || || ||||| |||||||| Sbjct 13388 CCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCC 13447 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || | || ||||| || | ||||| || || || | ||| Sbjct 13448 TTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTA 13507 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || ||||| | || || | || ||||||||| Sbjct 13508 ATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 13546 >seq355 Length=81473 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||| || || |||||||| | | || ||||| ||||| |||||||| | Sbjct 81448 CATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGTTGCTGATCGGGTGGGATTCCTTCCT 81389 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || | || || || |||| || || ||| || ||||| || | Sbjct 81388 TGTCTTGGATCTTGGTCTTGACGTTGTCGATAGTGTCAGATCCTTCGACCTCTAGTGTGA 81329 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||||||||||| || | ||| || ||||| Sbjct 81328 TGGTCTTGCCAGTTAATGTCTTTACAAAGATTTGCAT 81292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984303345831750