Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq2405 594 2e-165 seq26 150 6e-32 seq845 123 8e-24 seq10084 84.2 7e-12 >seq2405 Length=2039 Score = 594 bits (658), Expect = 2e-165 Identities = 1365/2024 (67%), Gaps = 66/2024 (3%) Strand=Plus/Plus Query 39766 CCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGT 39825 |||| |||||||| ||||| || |||||||| | | |||| |||||| |||| | Sbjct 23 CCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGCCGAATCCGG 82 Query 39826 CCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGA 39885 |||| || ||| |||| |||||| ||||||||||||||||||| || || Sbjct 83 TGGGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGGAACACACCGA 142 Query 39886 GCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCA 39945 | ||||| || | ||| ||||| ||||| || || | ||||||| || | | || | Sbjct 143 GAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGCAAAGTGTCGA 202 Query 39946 GGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGA 40005 |||||| || || |||||| ||||||||||| || |||||| |||| ||||| Sbjct 203 GGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCGATGACCGTGA 262 Query 40006 GGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT 40065 |||| || || ||||||||||||||||| |||||||| | || || || ||||||| Sbjct 263 GGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCTTCACACGAAGGGTAGT 322 Query 40066 CGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACCCACACCGGGATGTGGTCGACCA 40125 | || ||||| | ||||||||||| | ||| ||| |||||||| |||| | Sbjct 323 CCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATTGCGTCGGTGA 382 Query 40126 GAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTT 40185 | || ||| |||||||| || || ||||||||||| | |||| || || | Sbjct 383 GCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGGATCAGCCCCT 442 Query 40186 CGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCC 40245 | ||||| | ||| || | | || || | | |||||||| |||| || || | | Sbjct 443 CCAGACCCACCGCAGTCTTGTAGATCTTCGCGACGTCCGGGCTGGAGTCGATGAGTGCTC 502 Query 40246 GGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCA 40305 | | |||| ||||||||| |||||| ||||| | | | ||| ||| || | | Sbjct 503 GAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATACCGGAGACAGAGA 562 Query 40306 TCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAG- 40364 | ||| |||| | | | |||| |||||||| | || ||| ||| |||| Sbjct 563 TGTCCTTGGCCATGATGGGCGGCGGGAGTGCCTTGGTGATCTGATCGGCGATGGCGAAGC 622 Query 40365 --GGCTTGTC---CAGCACGCGGGCTGCGTCCTTCAT---CGCGTTGCGCGCCTTGATCC 40416 |||||| | | | ||||| || | |||||| || || ||| | |||||| Sbjct 623 CCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCTTG---GTCTTGATGG 679 Query 40417 GTCCGTACGTCGCGATCTGCGCGACCTTGTCG--GCCCCGTACTTCCGGGTGACGTACTG 40474 ||| | || || ||| |||||||||||| ||||| |||| || |||| | Sbjct 680 TGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCC--ACTTGTCCGTCGCGTAGCG 737 Query 40475 GATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCG 40534 | || |||||| ||||| || |||||||||||||| |||| ||||||||||||||| || Sbjct 738 AACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGGCATGGACACACG 797 Query 40535 CTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40594 ||||||||| ||||| |||||||| | | |||| | | ||||||| || |||||| Sbjct 798 CTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTCGATGTTGGTGAT 857 Query 40595 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC 40654 || | ||||||| |||| ||||||||| || || || || || || ||||| | || Sbjct 858 ACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGGCCCGACACGGAT 917 Query 40655 GCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCC 40714 ||| ||||| || | ||| | ||| |||| ||||||||||| | ||||||||| Sbjct 918 CCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTAGGCCGGGAAGCC 977 Query 40715 CATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCGTGCTCGTAGTCCGTGC 40773 ||| | | |||| | | |||||||||| | || || | | || ||| | || | Sbjct 978 CATTTCGTTGATGACGCCGATCTCGTAGTCGGCGC-GGGCGAGGTACTCCTGCGGCGGTC 1036 Query 40774 CGTTCGGGTACCGACGA-CG----CGCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGAT 40828 || ||||| | || ||| || ||||| || |||||| | | |||| Sbjct 1037 CGCTCGGGAAGCGGCGATCGAGTCCGCGCATC-----ACCTCGGCGCGCAGGAAGGTCTG 1091 Query 40829 CTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCTCGTGCTCGAACATGCC 40888 || |||||| ||||| || ||||| || ||||||| ||| | | | | ||| | | Sbjct 1092 CTGCGTGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCCCACACGTC 1151 Query 40889 GGTGGTGTCGAC--CA---TCTCGGCGATGTCCAGCGTGGT-CCGCAT-CCCCCACT-CC 40940 | || |||| || |||| ||||| | | ||| | ||||| ||||| | || Sbjct 1152 -CTCGT-ACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCCGGTACC 1209 Query 40941 CAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGTAGTACCCGGAG 41000 | || | |||||| ||||||||| || ||||| |||||||| ||| | Sbjct 1210 TCGTTGTCCCA------GATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAGCCGTCG 1263 Query 41001 CCCTCGAAGCGGAAGCG-GTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAG 41059 || ||||| |||||| ||| |||| |||||| |||||||||| | ||| ||||| Sbjct 1264 CCGTCGAACTTGAAGCGAGTG-GGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAGAGCAG 1322 Query 41060 TGCATCGTGA---GCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCAC 41116 || |||||| || | | |||| ||||||||| ||| | ||||| ||| | | Sbjct 1323 CGCCTCGTGATTCTCGGCGGCGTCCT---TGGTGACGTAATGGCAGTCGTTGGTGGCAAG 1379 Query 41117 CGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGAT 41176 || | | |||| ||||| |||| | |||| |||| || || ||||||||||| Sbjct 1380 TGGCGGAATACCGAGTTGCTTGCCGATGTCGAGCAGACCCTCTCGCACACGGCGCTCGAT 1439 Query 41177 CTCGATGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTCGCGACCCAGGATCTCCAGCCA 41236 | || ||||| ||||| |||||||| | | || || | ||| ||||||| |||| Sbjct 1440 CGAGAGACCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCTCCTGCCA 1499 Query 41237 GTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCAGGTTCAGCCTGGTCATGACTTC 41296 | | || || || |||||| | ||||| || || | |||| || || Sbjct 1500 CTTCGCGGCAGCTTCGAGAGCCTCGCGATCGTGACCGAGACGAAGGCGGGTCTGGATCTC 1559 Query 41297 GCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCACTCGGCGACGAGTTCCTT 41356 || ||||| |||||||| |||||||||||||| | | |||||| ||| |||| Sbjct 1560 ACCGGACGGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGATGAGCTCCTC 1619 Query 41357 GTCGAGGCGGGCGTACTTGCCCATCAGCCCCTC-CTGGTAG-GAGCGA-GACGTGATGCG 41413 ||| | || | | || || | | | ||||| ||| | |||||| ||| || Sbjct 1620 GTCCATCCGTGGCCATTTACCGAGCTGGCCCTCGATGGACGCGAGCGACGACAGCTTG-- 1677 Query 41414 CATGAGGTTGTGAAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTACGCACC 41473 | ||||||| | || || ||| ||||| || | ||| |||||||| ||||||||||| Sbjct 1678 -AAGAGGTTGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGTACGCACC 1736 Query 41474 GTTACCCGACACGTCGTAACGCTTCT-GCTCGGGCGA--CCCCCACTTGACCCGGTCAAG 41530 | |||| || ||||||| ||||| ||| |||| |||||| || || | Sbjct 1737 GCTACCGGAGACGTCGTCGGACTTCTGGCT---GCGATCTCCCCACAGAACTCGCTTGGT 1793 Query 41531 GCT-TCGCCTGTCGCCGGGGGCGACGTAGGCTTCCATTCCCACGATGGGCTTGATGCCCG 41589 | | || | | |||| |||| |||||| || || || | ||| ||||||||||| | Sbjct 1794 GTTGAAGCGAGAC-TCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATGCCGG 1852 Query 41590 CTGCGGTGGCCTGCTTGAACAGCTCGTAGGCACCATGCATGTGGCCGTGGTCGGTCACTG 41649 | | |||| ||| | | || | ||| || | ||||| ||||||||||||| Sbjct 1853 CGCTCTTTGCCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTCATGC 1912 Query 41650 CGATGGCTCGCATCCCCTGACGCTTGGCCTCGGCGACCATCTTCTCGATCTTGGCGTGCC 41709 ||| || ||| | |||| |||||| ||| ||| ||| |||||| | Sbjct 1913 CGACTGCGGTCATTTCGAGACGAGCGGCCTCCTCGAACATGGCGCCGACCTTGGCCGCAC 1972 Query 41710 CGTCGAGGAGCGAGAACTCTGAGTGGGCATGGAGATGAACGAAC 41753 ||||||| | |||| |||| | ||| || ||||| |||||| Sbjct 1973 CGTCGAGCATCGAGTACTCGGTGTGATTGTGAAGATGTACGAAC 2016 >seq26 Length=69211 Score = 150 bits (166), Expect = 6e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 42549 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 42490 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || | | |||||||||||||||||||||||| | || ||||| |||||||| || Sbjct 42489 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 42430 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | || || || || ||||| || |||||||| || ||||| |||| || Sbjct 42429 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 42370 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 42369 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 42312 Score = 118 bits (130), Expect = 3e-22 Identities = 228/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 ||||||||| || || |||||||| | |||||||||||| || |||| | | || Sbjct 43685 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 43626 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 || || || || ||||| | ||||||||| |||| || |||||| ||| || ||| Sbjct 43625 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 43566 Query 39471 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39523 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 43565 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 43513 Query 39524 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39583 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 43512 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 43453 Query 39584 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTC 39643 || ||| || |||||||| || |||||||||||||| |||| || | |||||| || Sbjct 43452 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 43393 Query 39644 CTGGTAGATGATGAGCTGGAAGGTCGGGTCCAG 39676 || || | ||||| | ||||||| |||| Sbjct 43392 TTGATACAGGATGATGCCGTAGGTCGGTGCCAG 43360 >seq845 Length=90334 Score = 123 bits (136), Expect = 8e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40562 ||||| || |||| |||||||| || ||||| ||||| |||||||| |||||||| | Sbjct 48040 AAGTCAATATCGAAGTCGGGCATCGAGACGCGTTCGGGATTCAGGAAGCGCTCGAACAGC 47981 Query 40563 AGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGA-CG--TAGGCGACCAGCGAA 40619 || || | || || ||||||||||| || ||| | || || || ||||||||| Sbjct 47980 AGGTTGTATTGCAATGGATCGAGGTCGGTAAT---GAGCAGCGAATACGCCACCAGCGAA 47924 Query 40620 CCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATG 40679 ||||| | || || || || || ||||| |||||||| ||||| ||||| |||| Sbjct 47923 CCGGCGCCCGAACCGCGGCCCGGACCGACGGGCACGCCGTTTTCCTTGGCCCACTGGATA 47864 Query 40680 AAGTCCGCGACGACGAGGAAGTA 40702 || || || |||| ||||||||| Sbjct 47863 AACTCGGCCACGATGAGGAAGTA 47841 >seq10084 Length=744 Score = 84.2 bits (92), Expect = 7e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||| ||||| || ||||| ||||| ||||| | || || || || |||| ||| Sbjct 595 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 654 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 ||||||| | || | |||||| |||||||||||||||| Sbjct 655 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163857544421340