Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq3754 571 3e-158 seq5362 123 1e-23 >seq3754 Length=1683 Score = 571 bits (632), Expect = 3e-158 Identities = 504/629 (80%), Gaps = 0/629 (0%) Strand=Plus/Plus Query 59325 CAACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCAC 59384 || ||||||||||||||| || ||| | || |||||||||||||||||| ||||||| || Sbjct 336 CAGCAACTTCTGGCTGCCCGAAAAGGTGCCGGTCTCCAACGACATCCCGTCCTGGGGAAC 395 Query 59385 GCTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGA 59444 |||||| | | | ||||| ||||| ||||| |||||||| ||||||||| ||||||| Sbjct 396 GCTGACCGCGCAGGAGCAGCAGCTCACCATGCGCGTCTTCACGGGCCTGACGCTGCTCGA 455 Query 59445 CACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGA 59504 ||| |||||||| || || || || || ||||| ||||| ||||||||||| || ||||| Sbjct 456 CACCATCCAGGGAACGGTCGGCGCCGTCAGCCTCATCCCGGACGCGATCACTCCCCACGA 515 Query 59505 GGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAA 59564 || ||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 516 AGAAGCGGTGTACACCAACATCGCCTTCATGGAATCGGTGCACGCGAAGAGTTACAGCTC 575 Query 59565 CATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGA 59624 |||||||||||||||||||| || || ||||||| |||||||||||||||||||| Sbjct 576 GATCTTCTCGACGCTGTGCTCCACCCCCGACATCGACGACGCGTTCCGCTGGTCGGAGGA 635 Query 59625 GAATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCC 59684 ||| || |||||||| |||||||| |||||||| || ||||||||| | || || || Sbjct 636 GAACCCCAACCTGCAGCGCAAGGCGCAGATCGTTCTCGACTACTACAACGGCGAGTCGCC 695 Query 59685 GCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTA 59744 ||| ||||| ||||| || |||||| | || ||| | ||||| |||||||| ||||||| Sbjct 696 GCTCAAGCGCAAGGTCGCATCGACGCTCCTCGAGAGCTTCCTCTTCTACTCCGGCTTCTC 755 Query 59745 CCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCT 59804 |||||||| ||||||||| || | ||||| || ||||| || ||| | ||||| || Sbjct 756 CCTGCCGACGTACTGGTCCTCGCGAGCCAAGCTCACCAACACCGCAGACCTCATCCGCCT 815 Query 59805 CATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCT 59864 |||||| || |||||||| |||||||| ||||||||||| ||||||| |||| ||||| Sbjct 816 CATCATCCGCGACGAGGCTGTGCACGGGTACTACATCGGCTACAAGTACCAGAAGGGCCT 875 Query 59865 GGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTACT 59924 || | | |||||| || || ||||| ||| ||||||||| || |||| | Sbjct 876 CGAACAGCTCACCGAGGCCGAGCGTGAAGAGCTCAAGAACTACACGTTCGAGTTGCTCTT 935 Query 59925 CGAGTTGTACGACAACGAGATTGAGTACA 59953 |||| | ||||| |||||| | || |||| Sbjct 936 CGAGCTCTACGAGAACGAGGTCGACTACA 964 Score = 154 bits (170), Expect = 8e-33 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 60010 TACAACGCCAACAAGGCGCTGATGAATCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAA 60069 |||||||||||||||||||| | |||||||||||||| | || |||||| ||||| Sbjct 1012 TACAACGCCAACAAGGCGCTCAACAATCTCGGCTACGAAGGCCTCTTCCCGAAGGACGAG 1071 Query 60070 ACCGAGGTGAATGCGGCGATCTTGGCGGCACTGTCCCCTGGCGGGGACGAGAACCACGAC 60129 || || || ||| |||| ||| || ||||||| || || | ||||||||| |||||| Sbjct 1072 ACGGACGTCAATCCGGCTATCCTGTCGGCACTTTCACCGAATGCGGACGAGAATCACGAC 1131 Query 60130 TTCTTCTCGGGCTCTGGCAGCACGTATGTGATTGGCAAGGCTGAGGTTACGGAAGACGAG 60189 |||||||| ||||| || ||| | || || || ||||| || | || |||||||| Sbjct 1132 TTCTTCTCCGGCTCGGGTAGCTCCTACGTCATCGGCAAAGCCGTCAACACCGAAGACGAC 1191 Query 60190 GATTGGGACTTCTAG 60204 || |||||||||||| Sbjct 1192 GACTGGGACTTCTAG 1206 >seq5362 Length=3136 Score = 123 bits (136), Expect = 1e-23 Identities = 341/514 (66%), Gaps = 49/514 (10%) Strand=Plus/Minus Query 62056 CAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGACGCCGAGGAC 62115 ||||| ||| | || ||| || ||||||||||||||| || |||| | ||| Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 62116 AACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGCGCAGCGC 62175 ||| ||||||||||||||||| || ||||| |||| |||||| ||||||||| Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 62176 CACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGCTGGCTCCGATTCG 62235 ||||||||| || ||| | |||| |||| ||| | || Sbjct 442 CACATCAAGATCGCCAAGGACTTGTGCGA---------GCGG-----TGGTAC--AT--- 402 Query 62236 GTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGACGAGG-GA-ACGT 62293 | ||| |||| ||| ||||| || | ||||| |||| || || Sbjct 401 -----------CAACCT--TCCCGATCCG-GATCTTGCCTACCTGGTCGAGAAGACACCC 356 Query 62294 GGATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGTACCTGAACC 62353 | || ||||| ||||||||| || || | ||||| |||| ||||| | || |||| Sbjct 355 GAAT--TCGACTCGTACATCACCGATCTCAACTGGGCTCAGCACTTCGCTTTGCTCAACC 298 Query 62354 GTGCGGAGATGATGGACCGCTTCGTCCAGGTGTTCGCGTGGTGGATGGGCGTCG--AGGC 62411 | | ||||||||||||||| |||| ||| |||||| | ||||| | || | || Sbjct 297 GCGAAGAGATGATGGACCGCGTCGTGAAGGACTTCGCGCATTTCATGGGAGACGGCAAGC 238 Query 62412 TC---AGCGT-GTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGTCCCCACCG 62467 | | | | | ||| || ||||| ||||||||||||||||||| ||| || | | Sbjct 237 CCGCGATCATCGACGAAGTCGAGCGGATCAACTGCCACCACAACTTCAC---CCAGAAGG 181 Query 62468 TGATCGAC--GGGGA-GCGAGTGTGGTTGACCCGCAAGGGGGCAATCGACGCGACCGAGG 62524 | || || ||| | | | |||||| ||| ||| ||||| || ||| | || | ||||| Sbjct 180 AGTTCCACATGGGCAGGGGTGTGTGGCTGAGCCGTAAGGGTGCGATCAAGGCAAACGAGG 121 Query 62525 GCAAGCTGGGCGTGATCCCGGGCTCGATGGGCAC 62558 ||| || || | ||||| || |||||||| || Sbjct 120 GCACGCCCGGGCTCATCCCCGGTTCGATGGGGAC 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258887004085380