Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq2405 637 2e-178 seq26 150 6e-32 seq845 123 8e-24 >seq2405 Length=2039 Score = 637 bits (706), Expect = 2e-178 Identities = 1368/2018 (68%), Gaps = 56/2018 (3%) Strand=Plus/Plus Query 40054 CCACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGT 40113 |||| |||||||| || || || |||||||| | | |||| |||||| |||| | Sbjct 23 CCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGCCGAATCCGG 82 Query 40114 CCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGA 40173 |||| || ||| |||| |||||| ||||||||||||||||||| || || Sbjct 83 TGGGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGGAACACACCGA 142 Query 40174 GCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCA 40233 | ||||| || | ||| ||||| ||||| || || | ||||||| || | | || | Sbjct 143 GAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGCAAAGTGTCGA 202 Query 40234 GGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGA 40293 |||||| || || |||||| ||||||||||| || |||||| |||| ||||| Sbjct 203 GGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCGATGACCGTGA 262 Query 40294 GGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT 40353 |||| || || ||||||||||||||||| |||||||| | || || || ||||||| Sbjct 263 GGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCTTCACACGAAGGGTAGT 322 Query 40354 CGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCA 40413 | || ||||| | ||||||||||| | || ||| |||||||| |||| | Sbjct 323 CCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATTGCGTCGGTGA 382 Query 40414 GCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTT 40473 |||| ||| |||||||| || || ||||||||||| | |||| || || | Sbjct 383 GCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGGATCAGCCCCT 442 Query 40474 CGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCC 40533 | ||||| | ||| || | | || || | | |||||||| |||| || || | | Sbjct 443 CCAGACCCACCGCAGTCTTGTAGATCTTCGCGACGTCCGGGCTGGAGTCGATGAGTGCTC 502 Query 40534 GGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCA 40593 | | |||| ||||||||| |||||| ||||| | | | ||| ||| || | | Sbjct 503 GAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATACCGGAGACAGAGA 562 Query 40594 TCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAG- 40652 | ||| |||| | | | |||| |||||||| | || ||| ||| |||| Sbjct 563 TGTCCTTGGCCATGATGGGCGGCGGGAGTGCCTTGGTGATCTGATCGGCGATGGCGAAGC 622 Query 40653 --GGCTTGTC---CAGCACGCGGGCTGCGTCCTTCAT---CGCGTTGCGCGCCTTGATCC 40704 |||||| | | | ||||| || | |||||| || || ||| | |||||| Sbjct 623 CCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCTTG---GTCTTGATGG 679 Query 40705 GTCCGTACGTCGCGATCTGCGCGACCTTGTCG--GCCCCGTACTTCCGGGTGACGTACTG 40762 ||| | || || ||| |||||||||||| ||||| |||| || |||| | Sbjct 680 TGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCC--ACTTGTCCGTCGCGTAGCG 737 Query 40763 GATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCG 40822 | || |||||| ||||| || |||||||||||||| |||| ||||||||||||||| || Sbjct 738 AACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGGCATGGACACACG 797 Query 40823 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40882 ||||||||| ||||| |||||||| | | ||||| | | ||||||| || |||||| Sbjct 798 CTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTCGATGTTGGTGAT 857 Query 40883 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC 40942 || | ||||||| |||| ||||||||| || || || || || || ||||| | || Sbjct 858 ACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGGCCCGACACGGAT 917 Query 40943 GCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCC 41002 ||| ||||| || | ||| | ||| |||| ||||||||||| | ||||||||| Sbjct 918 CCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTAGGCCGGGAAGCC 977 Query 41003 CATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCGTGCTCGTAGTCCGTGC 41061 ||| | | |||| | | |||||||||| | || || | | || ||| | || | Sbjct 978 CATTTCGTTGATGACGCCGATCTCGTAGTCGGCGC-GGGCGAGGTACTCCTGCGGCGGTC 1036 Query 41062 CGTTCGGGTACCGACGA-CG----CGCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGAT 41116 || ||||| | || ||| || ||||| || |||||| | | |||| Sbjct 1037 CGCTCGGGAAGCGGCGATCGAGTCCGCGCATC-----ACCTCGGCGCGCAGGAAGGTCTG 1091 Query 41117 CTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCTCGTGCTCGAACATGCC 41176 || |||||| ||||| || ||||| || ||||||| ||| | | | | ||| | | Sbjct 1092 CTGCGTGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCCCACACGTC 1151 Query 41177 GGTGGTGTCGAC--CA---TCTCGGCGATGTCCAGCGTGGT-CCGCAT-CCCCCACT-CC 41228 | || |||| || |||| ||||| | | ||| | ||||| ||||| | || Sbjct 1152 -CTCGT-ACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCCGGTACC 1209 Query 41229 CAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGTAGTACCCGGAG 41288 | || | |||||| ||||||||| || ||||| |||||||| ||| | Sbjct 1210 TCGTTGTCCCA------GATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAGCCGTCG 1263 Query 41289 CCCTCGAAGCGGAAGCG-GTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAG 41347 || ||||| |||||| ||| |||| |||||| |||||||||| | ||| ||||| Sbjct 1264 CCGTCGAACTTGAAGCGAGTG-GGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAGAGCAG 1322 Query 41348 TGCATCGTGA---GCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCAC 41404 || |||||| || | | |||| ||||||||| ||| | ||||| ||| | | Sbjct 1323 CGCCTCGTGATTCTCGGCGGCGTCCT---TGGTGACGTAATGGCAGTCGTTGGTGGCAAG 1379 Query 41405 CGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGAT 41464 || | | |||| ||||| |||| | |||| |||| || || ||||||||||| Sbjct 1380 TGGCGGAATACCGAGTTGCTTGCCGATGTCGAGCAGACCCTCTCGCACACGGCGCTCGAT 1439 Query 41465 CTCGATGCCGTGGTCCATCAGCTCCAGGAAGTACCGGTCACGCCCGAAGACCTCCAGGTA 41524 | || ||||| |||||||| || |||||| | ||| | || ||| |||| | | Sbjct 1440 CGAGAGACCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCTCCTGCCA 1499 Query 41525 CCGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTCAGCCGGGTCATGATCGC 41584 | |||| | | | |||||| | || ||||| || |||||| |||| | Sbjct 1500 CTTCGCGGCAGCTTCGAGAGCCTCGCGATCGTGACCGAGACGAAGGCGGGTCTGGATCTC 1559 Query 41585 ACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGGTCGAA 41644 |||| || || || || || ||| | ||||||| |||| |||||| || || Sbjct 1560 ACCGGACGGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGATGAGCTCCTC 1619 Query 41645 GTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGACCGCGAGCTGAGCTTCAT 41704 |||||| || || | || |||||| ||||||| | ||| |||| ||||| | Sbjct 1620 GTCCATCCGTGGCCATTTACCGAGCTGGCCCTCGATGGACGCGAGCGACGACAGCTTGAA 1679 Query 41705 GAGGTTGTGCAGGCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCACCCCG 41764 ||||||| | || |||||| |||| || | ||||| | ||| ||||||||||| | Sbjct 1680 GAGGTTGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGTACGCACCGCT 1739 Query 41765 ACCGCTCACGTCGTACCGCTTCTGGTCTTCCGT-GCCCCACTGGACTCGCTCCTGGTCGA 41823 |||| ||||||| ||||||| || | | |||||| | ||||||| || || Sbjct 1740 ACCGGAGACGTCGTCGGACTTCTGG-CTGCGATCTCCCCACAGAACTCGCTTGGTGTTGA 1798 Query 41824 AGCGGGAGTCCGGGGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCT 41883 |||| || || || || ||||| ||||||||||||||||||||||||| || ||| || Sbjct 1799 AGCGAGACTCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATGCCGGCGCTCT 1858 Query 41884 GCGCCGAGGTGAAGAAGTCGTACGCACCGTGAAGGTTGCCGTGGTCCGTCACTGCGACGG 41943 ||| | || |||| | | || |||| | ||| |||||||| |||| |||| | Sbjct 1859 TTGCCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTCATGCCGACTG 1918 Query 41944 CAGGAGCACCCTGGCGGGCGACCTCGGCGACCATCTGCTTC-ATCCGAGCGGCCCCGTCG 42002 | | | | || ||| |||| ||| ||| || | | | || || |||||| Sbjct 1919 CGGTCATTTCGAGACGAGCGGCCTCCTCGAACAT-GGCGCCGACCTTGGCCGCACCGTCG 1977 Query 42003 AGGAGGCTGTACTCGGAGTGGTTGTGCAGGTGGACGAA 42040 || | |||||||| ||| ||||| || || ||||| Sbjct 1978 AGCATCGAGTACTCGGTGTGATTGTGAAGATGTACGAA 2015 >seq26 Length=69211 Score = 150 bits (166), Expect = 6e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 42549 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 42490 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || | | |||||||||||||||||||||||| | || ||||| |||||||| || Sbjct 42489 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 42430 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || || || ||||| || |||||||| || ||||| |||| || Sbjct 42429 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 42370 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 42369 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 42312 Score = 113 bits (124), Expect = 1e-20 Identities = 227/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 ||||||||| || || |||||||| | |||||||||||| || |||| | | || Sbjct 43685 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 43626 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 || || || || ||||| | ||||||||| |||| || |||||| ||| || ||| Sbjct 43625 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 43566 Query 39759 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39811 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 43565 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 43513 Query 39812 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39871 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 43512 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 43453 Query 39872 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTC 39931 || ||| || |||||||| || |||||||||||||| |||| || | ||| || || Sbjct 43452 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 43393 Query 39932 CTGGTAGATGATGAGCTGGAAGGTCGGGTCCAG 39964 || || | ||||| | ||||||| |||| Sbjct 43392 TTGATACAGGATGATGCCGTAGGTCGGTGCCAG 43360 >seq845 Length=90334 Score = 123 bits (136), Expect = 8e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 40791 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40850 ||||| || |||| |||||||| || ||||| ||||| |||||||| |||||||| | Sbjct 48040 AAGTCAATATCGAAGTCGGGCATCGAGACGCGTTCGGGATTCAGGAAGCGCTCGAACAGC 47981 Query 40851 AGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGA-CG--TAGGCGACCAGCGAA 40907 || || | || || ||||||||||| || ||| | || || || ||||||||| Sbjct 47980 AGGTTGTATTGCAATGGATCGAGGTCGGTAAT---GAGCAGCGAATACGCCACCAGCGAA 47924 Query 40908 CCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATG 40967 ||||| | || || || || || ||||| |||||||| ||||| ||||| |||| Sbjct 47923 CCGGCGCCCGAACCGCGGCCCGGACCGACGGGCACGCCGTTTTCCTTGGCCCACTGGATA 47864 Query 40968 AAGTCCGCGACGACGAGGAAGTA 40990 || || || |||| ||||||||| Sbjct 47863 AACTCGGCCACGATGAGGAAGTA 47841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164817384764340