Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq431 145 2e-29 seq98 145 2e-29 seq404 132 1e-25 seq114 102 2e-16 >seq431 Length=62712 Score = 145 bits (160), Expect = 2e-29 Identities = 218/307 (71%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||| ||||| ||||| | |||||| ||||| || ||||| ||||| || || || Sbjct 52209 GTCCTCCATGGCCTTGACGAGACGACGTTGAATGTATCCAGTCTCTGATGTCTTGACGGC 52150 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 ||||||||| ||||| ||||||| ||||| |||||||| || | ||||| || || Sbjct 52149 TGTATCAATGAGACCCTCACGACCTCCCATGGCATGGAAAAAGAACTCTTGGGGAGTGAG 52090 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| | || ||||||||||| | |||||| || |||| |||||| Sbjct 52089 ACCTCTGAGGTACGAGTTTTCTACGAAACCACGAGACTCGGGACCATAGTCGTCCTTGGT 52030 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 |||||| |||| || | ||| | || | || |||||||| || || ||||| || Sbjct 52029 AAAGTGAGGCAATGTACGACTCTGGAAACCAAAGGGAATACGCTTACCCTCGACGTTTTG 51970 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTA-AATCACTGCCCTTGGAGCCAGCAT 302869 || || | || | |||||||| || ||||| | | | | |||||||| || || | Sbjct 51969 TTGACCGACACAGGCCATCATCTGAGAGATATTGATGAACGAT-CCCTTGGAACCTGCGT 51911 Query 302870 TTACCAT 302876 ||||||| Sbjct 51910 TTACCAT 51904 >seq98 Length=772300 Score = 145 bits (160), Expect = 2e-29 Identities = 664/1036 (64%), Gaps = 28/1036 (3%) Strand=Plus/Plus Query 155319 GCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTA 155378 || || |||||||| || ||||| || | |||||| | |||| ||| | ||| | | Sbjct 408316 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 408375 Query 155379 AATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGG 155438 |||| | | |||| || ||| | || || || ||||| || || | ||| ||||| Sbjct 408376 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 408435 Query 155439 CGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAAT 155497 | || | ||| | | | |||| | | || ||| |||| ||||||||| Sbjct 408436 CTGTGGCGCATGTTGGAATTTTTAG-CTTCCTCTACCGGATAATAATTATGATCAATAAT 408494 Query 155498 GTTATTTAAATTT---GTAACCA-ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAA 155553 ||||| | || ||| || ||| |||||| || ||||||| || |||| Sbjct 408495 TTTATTCAGGTTCAGGGTAGCCTGATA----GGTTACATCATATAATTTCTGATGATCAA 408550 Query 155554 ATGTTTTATCC-TCATTTACAAA-CATACCAAGACCAATAGACGCCAGATTACATACCGC 155611 | | ||| | | ||||| | | ||| |||| || ||||| |||||||| || Sbjct 408551 AC----TCTCCGTTGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGC 408605 Query 155612 AGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGT 155671 | ||| | | | | || |||| ||| || || ||||| ||||| |||||||| Sbjct 408606 AACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGT 408665 Query 155672 GCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGT 155731 |||||||| | |||||| ||||| ||||| ||||| || || | | || ||||| Sbjct 408666 TCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGT 408725 Query 155732 TCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTT 155791 ||| || || ||||||| |||||||| | ||| || || | || ||||| || Sbjct 408726 TCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTT 408785 Query 155792 GTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGGTAATCCT-CACCGTA 155848 | | ||||| || || ||||||| ||| | || ||| || |||| | Sbjct 408786 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCAT-CG--AATTCTGCACCAAA 408842 Query 155849 ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT 155908 ||||| |||||| ||| | || || || || | ||| | || | Sbjct 408843 GCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTC 408902 Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 ||| | ||| || | |||| |||||| |||||||| | || || || Sbjct 408903 TACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAG 408962 Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTA-AGAATTCCTCAATATCAGGATGGTGTG 156027 || || | || || || || || || || | | || || || ||| | ||| || Sbjct 408963 TTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCAC-ATCTGCATGCCATG 409021 Query 156028 GCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAG 156084 ||||||| || || |||||| ||| || | || || |||||| || ||||| || | Sbjct 409022 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 409081 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || | || || || | |||||| | ||| |||||| || || || ||||| | Sbjct 409082 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 409141 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||||| || || | | || | ||||| || || ||||||||||||| | || Sbjct 409142 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 409201 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 ||||||| |||| || |||| ||||| | |||| ||||||||| || || | || Sbjct 409202 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 409261 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | | |||| | |||| ||| | ||||||| || || | || || |||| || | Sbjct 409262 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 409321 Query 156325 GTGTTGCATGAATAAA 156340 | |||||||| |||| Sbjct 409322 GGGTTGCATGCGTAAA 409337 Score = 107 bits (118), Expect = 6e-18 Identities = 251/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Minus Query 133211 CATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||| |||||| || | || ||||||||||| ||||| || ||||| |||||| Sbjct 410835 CATTTCATTTCTCATATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAAC 410776 Query 133271 TTAG----GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGG 133326 | | |||| || ||| | ||||| || || ||||||||||| |||||||| Sbjct 410775 CTTGCAGTGAAC----TTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTGTTTTTATGG 410720 Query 133327 GCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTA 133386 | ||||| ||||||||| ||||| ||| || ||| | || || ||||| || Sbjct 410719 CTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTA 410660 Query 133387 CATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTA 133445 || |||||| | | | || ||| || ||| | ||| ||| || |||||||| Sbjct 410659 TATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCC-GTAGAGACGGTTCCTTGTG 410601 Query 133446 TTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTA 133505 | || || ||| | || ||||| | ||||| ||| | | | |||||| Sbjct 410600 TAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGG------GCGGAAATTTTGCCG 410547 Query 133506 CTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTA 133565 ||| | || ||||| || | ||| || |||||||| ||||| || ||||| || | Sbjct 410546 AACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGTTCGA 410487 Query 133566 TTTTTTGGCTTAAAAA 133581 | || ||| | ||||| Sbjct 410486 TCTTCTGGTTGAAAAA 410471 >seq404 Length=78127 Score = 132 bits (146), Expect = 1e-25 Identities = 417/644 (65%), Gaps = 8/644 (1%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||||| |||||||| ||| ||||| || | || ||||||||| | ||||| |||| Sbjct 49008 TGTATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGT 49067 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || || || || || |||||||| || || |||||||| || ||||| ||||| | Sbjct 49068 TTGACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCG 49127 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGT----ATCTGCCT 155804 || | ||| | |||||| || |||| || || |||| | ||| Sbjct 49128 ACTCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCTGGGG 49187 Query 155805 TCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864 | | ||| || | || || | ||| | || || || | |||||| || || Sbjct 49188 TG-GCCTCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCAGCGAGACCT 49246 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAAT 155924 ||| || | ||| ||||| || | ||| || | |||||||||||||| Sbjct 49247 GGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAAAG 49306 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | ||| |||| | || || || ||||| | || ||| || | ||||| Sbjct 49307 AGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGG 49366 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| ||| | ||| | || |||||| || || || ||| Sbjct 49367 TTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGGCA 49426 Query 156045 AAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || || || | ||||||| || || || || || |||||||| | ||||| || Sbjct 49427 AAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAACACG 49486 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||| |||| | ||| ||||| || || ||||| ||||| |||| |||| | Sbjct 49487 CGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATATGAACGGGCA 49546 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | ||| | || || | | || ||||| || || | | | || || || | |||||| Sbjct 49547 GCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGGGCGCAT 49606 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||| | |||| | | ||||| || || || ||||| | ||| Sbjct 49607 TGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCAT 49650 >seq114 Length=173045 Score = 102 bits (112), Expect = 2e-16 Identities = 325/496 (66%), Gaps = 6/496 (1%) Strand=Plus/Minus Query 251495 AAATCATACA-ATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCC 251553 |||||| ||| | ||||||||||||| |||||||||||||| ||||| | | | ||| Sbjct 20746 AAATCA-ACATACCACGCTCCATTTCTCCGAAACGAAGACCTCCATCTCTTGAACGACCT 20688 Query 251554 TCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCA 251613 || | || || | || ||| | | ||||| || || || || ||| || Sbjct 20687 TCTACTGGTTGTCTTGTAAGAATCTGAACTGGACCACGTGAACGACTGTGAATCTTGTCG 20628 Query 251614 TTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAAGGCATT 251673 | ||||||||||| | ||| || ||| | | ||||| || ||||| | | ||| Sbjct 20627 TCCACCATATGCTTCAAACGTTGATAGTAGGTTGGACCAATAAAGATTTGAGCATCCATA 20568 Query 251674 TGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTC 251733 | ||||| || | || ||||| || |||| ||| | || |||||||| || Sbjct 20567 CGACGACCAGTGTGACCATTGTACATGACCTCGTGACCAGTCATTTGATAACCAATCTTG 20508 Query 251734 TGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAA 251793 || || | |||| || | | | ||| | | |||| |||| |||| || | | Sbjct 20507 TGGAGAGCAGAAGAGATGGCCTCCACAGTGACATCGGTAAAGGGGGTGGCGTCACCTTCA 20448 Query 251794 AGACCCATTTGAATCA-ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCAT 251852 || | | || || ||||||| || | || ||| | || || | |||||||| Sbjct 20447 TCTCC-AGTAGAGGCAGACACTTTACCGAGCAGACACTCAATGAGCTGTCCAATAGTCAT 20389 Query 251853 ACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAA 251912 |||| |||||||| || || || | | ||| || || | || || | || | Sbjct 20388 ACGAGATGGAATAGCGTGAGGGTTTACAACGATATCTGGCACGATACCCTCGACGGTCCA 20329 Query 251913 GGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAAC 251971 ||||| ||||| || | || | | ||| ||||||||||||||||||||| ||| Sbjct 20328 GGGCAGATCCTCTTGA-CGGTAGGTCATACCACAAGTTCCCTTTTGTCCGTGACGTGAAG 20270 Query 251972 TGAACTTATCACCAAT 251987 |||||| |||||||| Sbjct 20269 AGAACTTGTCACCAAT 20254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471553498429685