Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq2405 594 2e-165 seq26 150 6e-32 seq845 123 8e-24 seq10084 80.6 9e-11 >seq2405 Length=2039 Score = 594 bits (658), Expect = 2e-165 Identities = 1350/2008 (67%), Gaps = 48/2008 (2%) Strand=Plus/Plus Query 39514 CCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATGTCCTCGAAGTTGT 39573 |||| |||||||| ||||| || |||||||| | | |||| |||||| |||| | Sbjct 23 CCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGCCGAATCCGG 82 Query 39574 CCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGA 39633 |||| || ||| |||| |||||| ||||||||||||||||||| || || Sbjct 83 TGGGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGGAACACACCGA 142 Query 39634 GCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTCCA 39693 | ||||| || | ||| ||||| ||||| || | || ||||||| || | | || | Sbjct 143 GAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGCAAAGTGTCGA 202 Query 39694 GGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGA 39753 |||||| || || |||||| ||||||||||| || |||||| |||| ||||| Sbjct 203 GGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCGATGACCGTGA 262 Query 39754 GGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT 39813 |||| || || ||||||||||||||||| |||||||| | || || || ||||||| Sbjct 263 GGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCTTCACACGAAGGGTAGT 322 Query 39814 CGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCA 39873 | || ||||| | ||||||||||| | || ||| |||||||| |||| | Sbjct 323 CCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATTGCGTCGGTGA 382 Query 39874 GAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTT 39933 | || ||| |||||||| || || ||||||||||| | |||| || || | Sbjct 383 GCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGGATCAGCCCCT 442 Query 39934 CGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCC 39993 | ||||| | ||| || | | || || | | |||||||| |||| || || | | Sbjct 443 CCAGACCCACCGCAGTCTTGTAGATCTTCGCGACGTCCGGGCTGGAGTCGATGAGTGCTC 502 Query 39994 GGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGGCA 40053 | | |||| ||||||||| |||||| ||||| | | | ||| || || | | Sbjct 503 GAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATACCGGAGACAGAGA 562 Query 40054 TCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAG- 40112 | ||| |||| | | | |||| |||||||| | || ||| ||| |||| Sbjct 563 TGTCCTTGGCCATGATGGGCGGCGGGAGTGCCTTGGTGATCTGATCGGCGATGGCGAAGC 622 Query 40113 --GGCTTGTCGA---GCACGCGAGCCGCGTCCTTCAT---CGCGTTGCGCGCCTTGATCC 40164 |||||| ||| | |||||||||| |||||| || || ||| | |||||| Sbjct 623 CCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCTTG---GTCTTGATGG 679 Query 40165 GTCCGTACGTCGCGATCTGCGCGACCTTGTCG--GCCCCGTACTTCCGGGTGACGTACTG 40222 ||| | || || ||| |||||||||||| ||||| |||| || |||| | Sbjct 680 TGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCC--ACTTGTCCGTCGCGTAGCG 737 Query 40223 GATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCG 40282 | | |||||| ||||| || |||||||||||||| |||| ||||||||||||||| || Sbjct 738 AACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGGCATGGACACACG 797 Query 40283 CTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40342 ||||||||| ||||| |||||||| | | ||||| | | ||||||| || |||||| Sbjct 798 CTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTCGATGTTGGTGAT 857 Query 40343 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC 40402 || | ||||||| |||| ||||||||| || || || || || || ||||| | || Sbjct 858 ACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGGCCCGACACGGAT 917 Query 40403 CCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCC 40462 |||| ||||| || | ||| | ||| |||| ||||||||||| | |||||| || Sbjct 918 CCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTAGGCCGGGAAGCC 977 Query 40463 CATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCGTGCTCGTAGTCCGTGC 40521 ||| | | |||| | | |||||||||| | || || | | || ||| | || | Sbjct 978 CATTTCGTTGATGACGCCGATCTCGTAGTCGGCGC-GGGCGAGGTACTCCTGCGGCGGTC 1036 Query 40522 CGTTCGGGTACCGACGACGGGCACCTCGATGGACCTCGTCCTCGAACCAGGTGATCTCCG 40581 || ||||| | || ||| | || || |||||| | | |||| || || Sbjct 1037 CGCTCGGGAAGCGGCGATCGAGTCCGCGCATCACCTCGGCGCGCAGGAAGGTCTGCTGCG 1096 Query 40582 TGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCTCGTGCTCGAACATGCCCGTGG 40641 |||| ||||| || ||||| || ||||||| ||| | | | | ||| | || | | Sbjct 1097 TGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCCCACACGTCC-TCG 1155 Query 40642 TGTCGAC--CA---TCTCGGCGATCTCCAGCGTGGTCT-TCATG-CCCCACTGCCAGATC 40694 | |||| || |||| |||| | | ||| | | |||| |||| | || | Sbjct 1156 T-ACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCCGGTACCTCGTT 1214 Query 40695 GGCGAAGAGTCGATCGCCGCCATCTCTTCGGCGGACTTCAGGTAGTACCCGGAGCCCTCG 40754 | | | ||| || |||||| | |||||||| |||||||| ||| ||| ||| Sbjct 1215 GTCCCA-----GATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAGCCGTCGCCGTCG 1269 Query 40755 AAGCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCG 40814 || |||||| | |||| | |||||| |||||||||| | ||| ||||| || ||| Sbjct 1270 AACTTGAAGCGAGTGGGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAGAGCAGCGCCTCG 1329 Query 40815 TGA---GCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCACCGGAGTG 40871 ||| || | | |||| ||||||||| ||| | ||||| ||| | | || | Sbjct 1330 TGATTCTCGGCGGCGTCCT---TGGTGACGTAATGGCAGTCGTTGGTGGCAAGTGGCGGA 1386 Query 40872 AGCGCGAGGTGCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCGATCTCGATG 40931 | |||| ||||| |||| | ||| | || || || |||||||||||| || Sbjct 1387 ATACCGAGTTGCTTGCCGATGTCGAGCAGACCCTCTCGCACACGGCGCTCGATCGAGAGA 1446 Query 40932 TCGTGGTCCATGAGTTCGAGCAGGTACCGGTCACGCCCGAAGACCTCCAGGTACCGACCA 40991 |||| ||||| |||||||| | | | ||| | || ||| |||| | || | Sbjct 1447 CCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCTCCTGCCACTTCGCG 1506 Query 40992 GCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCA 41051 || | | | |||||| | || ||||| || |||||| |||| ||||| Sbjct 1507 GCAGCTTCGAGAGCCTCGCGATCGTGACCGAGACGAAGGCGGGTCTGGATCTCACCGGAC 1566 Query 41052 GGGCAGCCAGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGCTCGAAGTCCATG 41111 ||||| || || || ||| | ||||||| |||| |||||| ||||| |||||| Sbjct 1567 GGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGATGAGCTCCTCGTCCATC 1626 Query 41112 CGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGACCGAGAGCTG--AGCTTCATGAGGT 41169 || || | || |||||| ||||||| | ||| |||| | | ||||| | ||||| Sbjct 1627 CGTGGCCATTTACCGAGCTGGCCCTCGATGGACG--CGAGCGACGACAGCTTGAAGAGGT 1684 Query 41170 TGTGGAGCCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCG 41229 || |||| |||||| |||| || | ||||| | ||| |||||||| ||| | || | Sbjct 1685 TGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGTACGCACCGCTACCGG 1744 Query 41230 ACACGTCGTAACGCTTCTGTTCGGGGGCTCCCCACTTGACGCGCTCCTGGCTCTGCCTCT 41289 | ||||||| |||||| | | |||||||| || |||| ||| || | Sbjct 1745 AGACGTCGTCGGACTTCTGGCTGCGATCTCCCCACAGAACTCGCT--TGGTGTTGAAGCG 1802 Query 41290 TG--TCGGGTGCCATGTAGGCTTCGATCCCGATCACGGGGATGATGCCAGC-CTCGGTCG 41346 | |||||||| |||||||| ||||| ||||| | || ||||||| || ||| | | Sbjct 1803 AGACTCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATGCCGGCGCTC-TTTG 1861 Query 41347 CGGCCTTGTAGAACTCGTAGGACCCGTGCATCTGGCCGTGGTCTGTGATGGCCAGAGCCC 41406 | | |||||||||| | || |||| ||| | |||||||| || ||| | | || Sbjct 1862 CCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTCATGCCGACTGCGG 1921 Query 41407 TCATCCCCTGGCGCTTCGCCTCGGCCACCATCTTGGCGATCTTGGCGTGCCCGTCGAGGA 41466 |||| | | || ||||| | | ||| | ||| |||||| |||||||| | Sbjct 1922 TCATTTCGAGACGAGCGGCCTCCTCGAACATGGCGCCGACCTTGGCCGCACCGTCGAGCA 1981 Query 41467 GTGAGAACTCCGAGTGAACATGAAGGTG 41494 ||| |||| | |||| ||||| || Sbjct 1982 TCGAGTACTCGGTGTGATTGTGAAGATG 2009 >seq26 Length=69211 Score = 150 bits (166), Expect = 6e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 42549 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 42490 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || | | |||||||||||||||||||||||| | || ||||| |||||||| || Sbjct 42489 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 42430 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || || || || ||||| || || ||||| || ||||| |||| || Sbjct 42429 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 42370 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 |||| |||| |||||||| ||||||||||||||||| || || || | |||| Sbjct 42369 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 42312 Score = 102 bits (112), Expect = 3e-17 Identities = 212/312 (68%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 ||||||||| || ||||||||||| | ||||| |||||| || |||| | | || Sbjct 43685 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 43626 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 || || || || ||||| | ||||||||| |||| || ||||| ||| || ||| Sbjct 43625 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 43566 Query 39219 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39271 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 43565 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 43513 Query 39272 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39331 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 43512 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 43453 Query 39332 CAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTC 39391 || ||| || || ||||| || |||||||||||||| |||| || | |||||| || Sbjct 43452 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 43393 Query 39392 CTGGTAGATGAT 39403 || || | ||| Sbjct 43392 TTGATACAGGAT 43381 >seq845 Length=90334 Score = 123 bits (136), Expect = 8e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 40251 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG 40310 ||||| || |||| |||||||| || ||||| ||||| ||||||||||||||||| | Sbjct 48040 AAGTCAATATCGAAGTCGGGCATCGAGACGCGTTCGGGATTCAGGAAGCGCTCGAACAGC 47981 Query 40311 AGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGA-CG--TAGGCGACCAGCGAA 40367 || || | || || ||||||||||| || ||| | || || || ||||||||| Sbjct 47980 AGGTTGTATTGCAATGGATCGAGGTCGGTAAT---GAGCAGCGAATACGCCACCAGCGAA 47924 Query 40368 CCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATG 40427 ||||| | || || || || || ||||| || ||||| ||||| ||||| |||| Sbjct 47923 CCGGCGCCCGAACCGCGGCCCGGACCGACGGGCACGCCGTTTTCCTTGGCCCACTGGATA 47864 Query 40428 AAGTCCGCGACGACGAGGAAGTA 40450 || || || |||| ||||||||| Sbjct 47863 AACTCGGCCACGATGAGGAAGTA 47841 >seq10084 Length=744 Score = 80.6 bits (88), Expect = 9e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||| ||||| || ||||| ||||| ||||| | ||||| || || |||| ||| Sbjct 595 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 654 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 |||| || | || | |||||| |||||||||||||| Sbjct 655 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGAT 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163297637554590