Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq12606 113 4e-20 seq2405 87.8 2e-12 >seq12606 Length=724 Score = 113 bits (124), Expect = 4e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 21384 GGCATCACGCAGCACGCCCTCGCGAAGGCCATTGGCGTCCCGCCGCGCCGAATCAACGAG 21443 |||||||||||| || ||| || | | ||| || || |||||||| || ||||||||| Sbjct 219 GGCATCACGCAGAACCGCCTGGCCACGATCATCGGTGTGCCGCCGCGGCGGATCAACGAG 278 Query 21444 ATCGTGAAGCGCAAGC-GTCGCATCACGCCGGACACCGCGCTGCGACTGGGCCGGTACTT 21502 |||||| | |||||| |||| ||||| | |||||||||||||| |||| | | || Sbjct 279 ATCGTGCACGGCAAGCGGTCG-ATCACCGCAGACACCGCGCTGCGGCTGGCCAAGGCGTT 337 Query 21503 CGGCGTGAGCGCTGCGTTCTGGCTGAACATGCAGTCCCACCACGACATCGA 21553 |||| ||||| ||||||||| ||||| ||| || | |||| |||| Sbjct 338 CGGCAACAGCGCCCAGTTCTGGCTCAACATCCAGGACCGCTACGAGCTCGA 388 >seq2405 Length=2039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 105045 TACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACCGCATGCTC---GTCGGT 105101 |||||| ||| |||| |||| | ||| || |||||| | | || ||||| Sbjct 965 TACTTCCTCGTGGTCGGCGACCTGATCAACCACGCCAAGGACGTCGGGATCCGTGTCGGG 906 Query 105102 CCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACCGAGCTC 105161 ||||||||||| ||||| | || ||| | || | ||| ||||| |||||| | || Sbjct 905 CCCGGCCGTGGATCGGCTGCCGGTTCGTTGGTGGCCTACGCGATGGGTATCACCAACATC 846 Query 105162 GACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAGAACTTC 105221 ||||| ||| ||||| || |||||||||| ||| || || ||||| | | | Sbjct 845 GACCCCATCCCGTACGGGTTGCTGTTCGAGCGATTCCTCAACCCCGAGCGTGTGTCCATG 786 Query 105222 CCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAG 105263 ||||| |||||| |||||||| | |||||||||||| Sbjct 785 CCCGATATCGATATCGACTTCGATGATCGCCGTCGCGGCGAG 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455993758615400