Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq6140 145 1e-29 seq7603 111 2e-19 seq362 104 3e-17 >seq6140 Length=1248 Score = 145 bits (160), Expect = 1e-29 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| |||||||| | ||| | |||||| |||||||||| ||| | || Sbjct 956 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 897 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 | ||||| || | ||||||||| || || || || ||||| || ||| Sbjct 896 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 837 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||||||||||||||| || || ||| || || || || || || || || || Sbjct 836 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 777 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 ||||| |||||||| ||| | || ||||| ||||| ||||| || || | |||||||| Sbjct 776 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 717 Query 99192 GCATGGACTGCGC 99204 | ||| |||||| Sbjct 716 TCCTGGCCTGCGC 704 >seq7603 Length=749 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTC-AACTTGCA 99010 || || ||||| || ||||| | |||||||| ||||||||||||||| | ||||| Sbjct 111 GATCGAACCGGAACCGGCACCCGCAGCATCTTCGGTCACCAGATGCGTTTCGATCTTGC- 169 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || || ||||| || || |||||| |||||| || || || | ||||| Sbjct 170 CGACGGCTTTCCGCTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAGTCAACGAACT 229 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 |||||||||||| |||||| |||| | || ||| | || | || || |||| Sbjct 230 CCTGTGGTTCCTGCGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACGGCGTCTCCAT 289 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||| ||||| ||| | || || || ||||| || || ||||| |||||||| Sbjct 290 CTGGGACGAGTGGGCCGACGAGAACGGTGAACTCGGCCCCGTCTACGGCGTCCAGTGGCG 349 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||| | || || ||||| || ||||| || |||||| ||||| | || || ||||| ||| Sbjct 525 AAGCTCTCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAAC 584 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704 ||||| || || || || | |||||| | || |||||||| | | || ||| Sbjct 585 ATCGCCAGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGC 644 Query 99705 GATTTCGTCTGGACCGGCGGTGA 99727 || ||||||||||||||||| || Sbjct 645 GAGTTCGTCTGGACCGGCGGCGA 667 >seq362 Length=339261 Score = 104 bits (114), Expect = 3e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 ||| | ||| | || || |||||||| | ||| || ||||| |||||| | |||||| Sbjct 148595 AAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAAC 148536 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 | || ||||| || || ||||| || ||||| || | || |||||||| Sbjct 148535 CTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCAC 148476 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 |||||| | ||||| | | || ||||||||||| |||||||||| || |||| Sbjct 148475 GAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTA 148416 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAG 99185 | || ||||| || ||||| || |||| || ||||| || || || || || || Sbjct 148415 AAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAA 148356 Query 99186 TGGCGGGCATGG 99197 ||||| ||||| Sbjct 148355 TGGCGTTCATGG 148344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716511343770200