Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq1320 109 2e-19 seq215 107 6e-19 seq1130 105 2e-18 seq45 86.0 2e-12 >seq1320 Length=7270 Score = 109 bits (120), Expect = 2e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCG 33222 || |||||| ||| || || ||||| || || | | || || ||| |||| ||| Sbjct 5970 ATCATGGCAGTTCGTGGCATTAACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCG 6029 Query 33223 GAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAG 33282 ||||| || || || || ||||| ||| || ||| | || || || || Sbjct 6030 GAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAA 6089 Query 33283 CAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTT 33342 ||| || ||| |||||||| | | |||||||||||||||||||||||||| Sbjct 6090 ACCTGGCGTGACAAACAGACAGGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTG 6149 Query 33343 ATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTAT 33402 | ||||| ||||| || || |||||||||||||| |||||||| ||| | ||||| || Sbjct 6150 CTGTTCGGCAAGCTCGCGGAAGTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTAC 6209 Query 33403 GTAGAAGG 33410 | ||||| Sbjct 6210 ATCGAAGG 6217 >seq215 Length=48791 Score = 107 bits (118), Expect = 6e-19 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 4895 CCAGATTTTATTTACCGCATTCTCTCTGGCAATCTTGCGACCAATTTCAGCGTCGAAATT 4954 |||||| || | | | || |||| | |||||||||||| || | ||| |||||||| || Sbjct 17550 CCAGATCTTCTGTTCGGCGTTCTGGCGGGCAATCTTGCGGCCCACTTCGGCGTCGAAGTT 17491 Query 4955 CTCTGGACTGGCGCAGGCGCTTTCTCCTGTCACGGTGAAGCCGTTTTTCAGCACCAAGAC 5014 ||| ||||||||||| ||||| || || || |||||||| ||||| ||| |||| ||| Sbjct 17490 CTCCGGACTGGCGCATGCGCTCTCACCGGTGACGGTGAAACCGTTGCGCAGGACCAGGAC 17431 Query 5015 GCAAAAGGT 5023 || ||||| Sbjct 17430 ACAGAAGGT 17422 >seq1130 Length=54118 Score = 105 bits (116), Expect = 2e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 4871 CTTAAGGAGATAACCCTCAAGCATCCAGATTTTATTTACCGCATTCTCTCTGGCAATCTT 4930 ||| ||| |||| || || || ||||||||| | | |||||||| | | || | || Sbjct 31335 CTTCAGGCGATAGCCTTCCAGTTGCCAGATTTTCTGTTCCGCATTCGCACGCGCGACTTT 31276 Query 4931 GCGACCAATTTCAGCGTCGAAATTCTCTGGACTGGCGCAGGCGCTTTCTCCTGTCACGGT 4990 || || ||||| || ||||| || || ||||||||||||||||| || || ||||| || Sbjct 31275 CCGGCCGATTTCGGCATCGAAGTTTTCCGGACTGGCGCAGGCGCTCTCGCCGGTCACCGT 31216 Query 4991 GAAGCCGTTTTTCAGCACCAAGACGCAAAAGGTAAG 5026 ||||||||| ||| | || |||||||| || || Sbjct 31215 GAAGCCGTTGCGCAGAATCAGCACGCAAAAAGTCAG 31180 >seq45 Length=185997 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 33249 CGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCAACAGGGGA 33308 ||| ||| ||| ||| |||||| || || ||||||| ||| || ||| || | Sbjct 40113 CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCA 40172 Query 33309 AAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGGC 33368 ||| ||| | || |||||||| || ||| || ||||| ||| | |||||| | || Sbjct 40173 GAAGGTCGAGAAAACCGAATGGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGC 40232 Query 33369 TGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAA 33413 || ||||||||||||||||| || ||||| || | ||||| || Sbjct 40233 CGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAA 40277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152019513524340