Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq585 136 1e-27 seq1667 125 2e-24 seq211 122 2e-23 seq1910 120 8e-23 seq208 100 8e-17 seq2164 89.7 1e-13 >seq585 Length=21099 Score = 136 bits (150), Expect = 1e-27 Identities = 337/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Plus Query 39275 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 39334 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 20183 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20242 Query 39335 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTG 39394 ||||| || ||||| | ||| || | ||| ||| ||||| | || | | | | Sbjct 20243 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCA-GAGAAGTTGTTGATATTT 20301 Query 39395 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCA 39452 | | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| |||| Sbjct 20302 CAGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCA 20359 Query 39453 CGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-G 39510 || || | ||||| ||| || | | | || || || |||| | | Sbjct 20360 CGCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTG 20417 Query 39511 ACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCC 39570 ||| | |||||| | | | || || || || | || || || || || || Sbjct 20418 ACAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACC 20477 Query 39571 AGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCA 39630 |||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| || Sbjct 20478 AGCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCA 20537 Query 39631 CGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTA 39689 | |||||||| | |||| | || | || ||| |||||| |||| | || ||| Sbjct 20538 CAGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTG 20596 Query 39690 TACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAG 39747 ||| | || | ||| ||||||| ||| ||| ||| | |||||| || | || | Sbjct 20597 TACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGG 20654 Query 39748 CAAGCCAGCGTCCCATCTGG 39767 || | | || | |||| || Sbjct 20655 CACGGTAACGGCTCATCGGG 20674 >seq1667 Length=2119 Score = 125 bits (138), Expect = 2e-24 Identities = 161/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 37253 CGTACGCAAAAATTATTG--TATCGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAAC 37310 |||||| ||||| |||| ||| |||||||||||||||||||| |||||||||||||| Sbjct 1661 CGTACGTAAAAA--ATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAAC 1718 Query 37311 CCGCCGTCGAGCGGGTTTTGTC-GTTTCTGGGGCTGGGGATTCGTTGGTCCTGGTCTATT 37369 |||||||||||| |||||| | ||| || | || | ||| | || | || || Sbjct 1719 CCGCCGTCGAGCTGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGAT--AACTCAATA 1776 Query 37370 CCGCAGTTATCCATTGGTTCGGCTTCTTTGACGTTTCCGCTTCTAATTTGCTGTACATGA 37429 || |||||| || || || | ||| | ||||||| |||| ||||| ||| | Sbjct 1777 CCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCTGCTT---TTTTGCGATACGTTG 1833 Query 37430 TGTTCCCTCAATTTGCACCTGCTGTATCAGCGAGGTG 37466 | |||||||||||| |||| ||| | || |||||||| Sbjct 1834 TATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTG 1870 >seq211 Length=76543 Score = 122 bits (134), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 8822 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8881 || ||||| ||||||||| || | ||||| | ||| | || || || || | Sbjct 24527 CGCTTCACTCTGACCGAGCGCCAATCGCTGCTCAACTACGGCATCGCCACCGCTTACTAC 24586 Query 8882 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATTCTTACGGG 8941 ||| |||| ||||||||||||| | ||||||| ||| ||| || | | ||| Sbjct 24587 GAAGGCGGTTACGTGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGC 24646 Query 8942 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8999 ||||| || ||| || |||||||| || ||||| ||||| || | | | ||| Sbjct 24647 CAGGCGGACAATTCCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGC 24704 Query 9000 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 9059 || ||| | ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 24705 GCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCA 24764 Query 9060 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGG 9119 | |||||||| |||| ||| |||| ||||||||| ||| || || ||| | | Sbjct 24765 CGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTG 24824 Query 9120 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGT 9179 | ||| |||| || | | || ||||| ||| ||| ||||| || Sbjct 24825 CCCAGTACGCCAAGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGC 24884 Query 9180 ACCTGGTTGTGGAGCGTGA-TGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCT 9238 ||||| | || ||||| || ||||| || |||| ||| | ||| |||||||||||| Sbjct 24885 ACCTGATCGTCGAGCGCGACAGCCAG-GACCCGAGCCGGGTCAACGTGCTGTTCCCGCCG 24943 Query 9239 GACTATGTTAACCAGTTGCGTGTTTTTGC 9267 || || || ||| | |||| || || || Sbjct 24944 GATTACGTCAACGGGCTGCGGGTGTTCGC 24972 >seq1910 Length=22743 Score = 120 bits (132), Expect = 8e-23 Identities = 249/367 (68%), Gaps = 3/367 (1%) Strand=Plus/Plus Query 39274 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 39333 ||||| ||| || | || | || | ||| | |||||||| ||| ||| ||||| || Sbjct 10396 CGGCAGCCACTCCGTTTTGAAGCTGCGGAACAGCCGTTCCATCGGGGCGTTGTCCCAACA 10455 Query 39334 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACT 39393 ||||| || ||||||||||| |||| ||| | || ||||||||| ||| ||||| | Sbjct 10456 ATTTCCCCGACGGCTCATACTTTGTCGTATCCGATAGCGCCACAATCGCTG-ACGGAATT 10514 Query 39394 GCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCA-CCCCGCCGGGCTTACCA 39452 | ||| | || ||||| || ||||| || |||| || |||| ||| | ||| Sbjct 10515 TTCGGCTGGCGTACTGACTACCTTGATCCGAATGAAACAGCAGCCCCTGCGGTC-GACCG 10573 Query 39453 CGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGAC 39512 || || | |||||||||||||||| || || | ||| ||| | ||| Sbjct 10574 CGCTGCTCAAAGGCCATTTCCAGCGCTTGCACAACAAGGTCGGCGTCGGGCCGTAGCGAG 10633 Query 39513 ATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAG 39572 | ||||||||||| | | | |||||||| || | || || || | ||| ||| Sbjct 10634 AATGCCCAGCCCACCGCTCGGCGAGCGAACAGATCCAACACCACAGCCAAGTAGTACCAT 10693 Query 39573 CGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACG 39632 ||| || ||| | |||||| | ||| |||||||| || ||||||||| | ||| Sbjct 10694 CGCCCCTGCGCCCAAACATAGGTGATATCGCCGCACCAGACGTGATTTGGCGCCTCCACC 10753 Query 39633 GCGAACT 39639 | ||||| Sbjct 10754 GTGAACT 10760 >seq208 Length=140336 Score = 100 bits (110), Expect = 8e-17 Identities = 244/364 (67%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 39262 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 39321 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 12781 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 12840 Query 39322 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 39381 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 12841 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 12900 Query 39382 CTGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGC 39441 ||| ||||||| | | ||| || || || |||||||||||| || ||| || || || Sbjct 12901 CTG-CCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCA-CCTGC 12958 Query 39442 CG-GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCC 39500 | ||||| || || || | ||||| || || || || || ||| | ||| Sbjct 12959 TGTGGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCC 13018 Query 39501 GGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 39560 ||| || | |||||||| | | | | | |||| || || || ||||| Sbjct 13019 GGCTTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCC 13078 Query 39561 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 39618 ||||| |||||| ||| || |||||| ||||| | ||| |||||||| ||| | | Sbjct 13079 AGGTAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGT 13136 Query 39619 TTGG 39622 | || Sbjct 13137 TCGG 13140 >seq2164 Length=1578 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24835 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 24886 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132576347642970