Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021867.1 Length=46978 Score E Sequences producing significant alignments: (Bits) Value seq98 172 2e-38 >seq98 Length=772300 Score = 172 bits (190), Expect = 2e-38 Identities = 348/508 (69%), Gaps = 15/508 (3%) Strand=Plus/Minus Query 35343 TGTGGTTGCTCACTTTCACTTAGTAATGGTATTTCTG--CATTGTACGGATTCTTTGCTG 35400 ||| || || ||||| ||| | || |||| || | |||| | | || ||| || | Sbjct 711817 TGTAGTAGCCCACTTCCACCTGGTTATGGGATCGGCGGCCATTTTTGGTATGCTT-GCAG 711759 Query 35401 GTGTTTACCACTGGTTTCCAAAAATGTTCGGGCGTATGATGAATAAAAATTTAGGTTATA 35460 | ||||| |||||||| || |||||||| || | |||||||| | || || | |||| Sbjct 711758 GGGTTTATCACTGGTTCCCTAAAATGTTTGGCAGAATGATGAACGATAAATTGGCTTATC 711699 Query 35461 TTCACTTTTGGATTACTGCAATTTGTGCTTA--TGGTGTTTTCTATCCAATGCACTTTAT 35518 |||| || ||| | ||| | |||||||| |||| |||| || |||||||| | Sbjct 711698 TTCATTTCTGGGTAACTTTTGTATGTGCTTACCTGGTATTTTTC--CCGCTGCACTTTTT 711641 Query 35519 AGGGATGGCTGGATTACCACGTCGTTACTACACAAATACTAACTTTCCATTATTTGATGA 35578 ||| ||| || |||||||||||||||| || |||| | ||| || | || | Sbjct 711640 AGGTCTGGACGGTGTACCACGTCGTTACTATGCATTTACTGAATTTGAGTT-TATGCAAA 711582 Query 35579 TTTAGCTGATGTGAATAAA-GTAATTACTACTTTTGCTTTGATTGGAGCAGCTTTC---C 35634 | | | | | |||| || || ||| | || || | |||||| | | Sbjct 711581 AATGGGTTAC---AGTAAACGTTTTTGTTACCTGGGCAGCAATCGTTGCAGCTCTAGCAC 711525 Query 35635 AATTGGTATTTATGTGGAATTTCTTTACTAGTATTTTTTACGGaaaaaaaGCTGTGCAAA 35694 || ||| || ||| || || || | ||||||| | || |||||||| |||| Sbjct 711524 AAGTGGCTTTCCTGTTTAACTTTTTCTATTCTATTTTTAAAGGTAAAAAAGCGCCACAAA 711465 Query 35695 ATCCATGGAGGTCTAATACTCTTGAGTGGACTACACCAGTGGAACATGTACATGGAAACT 35754 | || ||| || || || | |||||||||||||| ||||||||| | |||||||||| Sbjct 711464 ACCCTTGGGAATCCAACACATTGGAGTGGACTACACCTGTGGAACATCTGCATGGAAACT 711405 Query 35755 GGCCAGGTGCTATCCCAGAAGTTTATAGATGGCCTTATGATTACAGTAAACCAGGGCATG 35814 |||| |||| || ||| ||| || | ||||| ||||||||||| ||||| || || Sbjct 711404 GGCCTGGTGAAATTCCAACAGTATACCGTTGGCCATATGATTACAGCAAACCTGGAGCTG 711345 Query 35815 ACGAAGATTTTGTTCCTCAAACTGTGCC 35842 | |||||||| ||||||| || ||||| Sbjct 711344 AAGAAGATTTCATTCCTCAGACAGTGCC 711317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150183019001400