Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq593 87.8 1e-12 >seq593 Length=58250 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||||||||| || || | || ||||| || ||||| | ||| ||| || Sbjct 29377 ATGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCT 29436 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| ||||| | || ||| Sbjct 29437 GAC---ACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGAT 29493 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||||| |||| || || || || || ||||||| | | || | | || ||| Sbjct 29494 CAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTAC 29553 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||||||||| |||||||| Sbjct 29554 AACATTCAAAAGGAATCTAC 29573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| ||||| || || || || || || ||||| ||| | ||| ||| || Sbjct 29149 ATGCAAATCTTTGTAAAGACCTTGACTGGAAAGACCATCACCCTGGAAGTTGAGGGATCT 29208 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| ||||| | || ||| Sbjct 29209 GAC---ACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGAT 29265 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || || | ||| || || || || ||||||| | | || | | || ||| Sbjct 29266 CAACAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTAC 29325 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||||| |||||||| | ||| |||| Sbjct 29326 AACATTCAAAAGGAATCTACTCTTCACTTGGT 29357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412771133744465