Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_022058.1 Length=52519 Score E Sequences producing significant alignments: (Bits) Value seq2522 82.4 3e-11 seq813 80.6 9e-11 >seq2522 Length=6889 Score = 82.4 bits (90), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 4239 GGGGCAGTAGCTCAGTCGG-TAGAGCTGCGGACTCTTAATCCGTAGGTCGCAGGTTCGAT 4297 ||||| ||||||||||||| |||||| | |||||| |||||| | |||||| ||||||| Sbjct 6077 GGGGCGGTAGCTCAGTCGGTTAGAGCCGTGGACTCATAATCCATTGGTCGCGGGTTCGAG 6018 Query 4298 CCCTGCCTGCCCCAC 4312 ||| ||| ||||||| Sbjct 6017 CCCCGCCCGCCCCAC 6003 >seq813 Length=65357 Score = 80.6 bits (88), Expect = 9e-11 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 4233 TCTTTCGGGGCAGTAGCTCAGTCGGTAGAGCTGCGGACTCTTAATCCGTAGGTCGCAGGT 4292 ||||||||| | |||||||| |||||||| ||||||| ||||||||| |||||||||| Sbjct 20918 TCTTTCGGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGT 20859 Query 4293 TCG-ATCCC 4300 ||| ||||| Sbjct 20858 TCGAATCCC 20850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167911270136610