Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq211 250 1e-61 seq7489 217 7e-52 seq1143 188 4e-43 seq4107 111 8e-20 seq1862 91.5 7e-14 seq1863 82.4 4e-11 >seq211 Length=76543 Score = 250 bits (276), Expect = 1e-61 Identities = 555/832 (67%), Gaps = 3/832 (0%) Strand=Plus/Plus Query 67572 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 67631 |||| ||||| | | ||||||| ||| |||||||| || || || | ||||| Sbjct 35751 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 35810 Query 67632 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 67691 | || ||||||||||||||||| ||||| || || | || || ||| | | | | Sbjct 35811 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 35870 Query 67692 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 67751 || | || || || || | || | || | | |||| ||||| || | || || | Sbjct 35871 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 35930 Query 67752 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 67811 |||| ||||||| ||| || || | || ||| | || ||||| ||| || |||| Sbjct 35931 CTGAATACGCCGGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACA 35990 Query 67812 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 67871 | || ||||| || ||||| ||| ||| | || || || || | | | | Sbjct 35991 CCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGTGA 36050 Query 67872 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 67931 |||| || ||||| ||||| |||||||| || ||| || ||||||| || || || | Sbjct 36051 TCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCG 36110 Query 67932 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 67991 || |||||| ||||| || |||||| ||||||| |||||| |||| || | ||||| | Sbjct 36111 ACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGGTA 36170 Query 67992 CGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 68051 || | | ||||| | | | | || ||| | || |||||||||| Sbjct 36171 ACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCG 36230 Query 68052 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 68111 || | | ||||| || ||||||||||||||||| || ||| |||||||| | Sbjct 36231 TGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGCTT 36287 Query 68112 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 68171 |||| ||| |||| |||| | | | | | | ||||||||| || |||| ||| || | Sbjct 36288 CGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGGTA 36347 Query 68172 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 68231 | || ||||| || || || ||||||||| |||| || ||| ||| ||||| |||| Sbjct 36348 GCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGT 36407 Query 68232 TTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAACTCCTCGACATGGCCGTTT 68291 | || |||||||| |||| || | || | | ||| | ||||| ||| ||| Sbjct 36408 TCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGCGTGC 36467 Query 68292 CCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCC 68351 | || || || |||| || || ||||||| ||| | || || ||||||| Sbjct 36468 TGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACGGCAGCAAGATCGGCC 36527 Query 68352 AGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGC 68403 |||||||| |||| | | ||| || ||| |||||||| || ||||| Sbjct 36528 AGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAACCCGGATGTTGCCGC 36579 >seq7489 Length=570 Score = 217 bits (240), Expect = 7e-52 Identities = 387/564 (69%), Gaps = 23/564 (4%) Strand=Plus/Plus Query 67679 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 67738 || ||||| || |||||||| ||| ||| |||| ||| || | ||||||||| || Sbjct 11 CTGCACGCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAG 70 Query 67739 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 67798 || | ||||| || || || || || ||| || || ||| ||| ||| |||| Sbjct 71 CACGCACTCGATCCCGACTATGCAGCCAAGCTGGGCGTCGATACCGATGCACTCCTGGTC 130 Query 67799 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 67858 |||||| ||||| || ||||||||||| || ||| ||| | || || || ||| Sbjct 131 TCGCAGCCGGACACGGGTGAGCAGGCCCTCGAAATCACCGACATGCTGATCCGTTCAGGC 190 Query 67859 GAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAA 67918 | | |||| |||| | ||||| ||||| || || || || || || ||| ||||| Sbjct 191 GCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCGAA 250 Query 67919 GGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGC 67978 || || || || ||| |||||||| |||| || || |||||| ||||| ||||| Sbjct 251 GGCGAGATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGCGC 310 Query 67979 AAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC------CCTGTGGGTGAATCAG 68032 ||| | ||||| ||||| | |||| || ||| | | | | || ||| Sbjct 311 AAGATCACCGG------TGCCATGAACAACTCGGGCACCACCGTCATCTTCATCAACCAG 364 Query 68033 CTGCGCGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACCGGTGG 68088 || |||||||||||||| ||| | ||| |||||| |||||||||||||| Sbjct 365 CTTCGCGAGAAGATCGG---TGTGATGTTCGGTTCTCCCGAA----ACCACCACCGGTGG 417 Query 68089 TAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAA 68148 |||||| ||| |||||||| ||||| || | || |||| | |||| || || Sbjct 418 TAAGGCACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAA 477 Query 68149 GGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 68208 ||| || || || || || |||||||| ||||| ||||| |||||||||||| | || Sbjct 478 GGACGGTACCGACGCAGTGGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGC 537 Query 68209 GCCTCCGCACCGCCAGGCTGAGTT 68232 ||| ||| | ||||| ||||| Sbjct 538 GCCGCCGTTCAAGCAGGCCGAGTT 561 >seq1143 Length=31399 Score = 188 bits (208), Expect = 4e-43 Identities = 529/806 (66%), Gaps = 16/806 (2%) Strand=Plus/Plus Query 67574 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 67633 ||||| ||| | | ||||| ||| || ||| | || || | ||| | ||||| || Sbjct 23731 ACCGGTTCGCTCGGCCTGGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTG 23790 Query 67634 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 67693 ||||| ||||||||||| || || || || || | || || ||| || | | || Sbjct 23791 GTGGAAATCTACGGTCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAAACCATTGCT 23850 Query 67694 --AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 67751 ||||| | | | || || | | ||||| ||||| ||||| || | |||||| Sbjct 23851 GAAATGCAAAAACTG--GGCGGTACCTGCGCCTTTATCGATGCCGAGCACGCGCTCGACG 23908 Query 67752 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 67811 | ||||| ||| || ||| | | | | | || || |||||| || | Sbjct 23909 TCGGCTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAGCCGGATA 23968 Query 67812 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 67871 | ||||||||||| ||||| ||| ||| ||||| ||| ||| || | || Sbjct 23969 CGGGCGAGCAGGCGCTGGAAATCTGCGACGCCCTCGTGCGGTCGGGCAGCGTCGACCTCG 24028 Query 67872 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 67931 | || | ||||| ||||| || ||| ||| || || ||| ||||||| ||||| || | Sbjct 24029 TTGTCATCGACTCCGTGGCCGCACTGACGCCACGCGCCGAGATCGAAGGCGACATGGGTG 24088 Query 67932 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 67991 | || | |||||||| || ||||||||||| || || |||||||||||||||| Sbjct 24089 ATTCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGGTT 24148 Query 67992 CGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 68051 | || | |||| || || || | | | | || ||| | ||| |||||||||| Sbjct 24149 CCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCG 24208 Query 68052 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 68111 || | | ||||| || ||||||||||| || || || ||| |||||||| | Sbjct 24209 TGATGTTCGGCAGCCCG---GAAACCACCACCGGCGGCAATGCCCTGAAATTCTACGCGT 24265 Query 68112 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 68171 | ||||| |||| ||||| | | || | | ||| |||||||| | |||||| Sbjct 24266 CCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCCGGCGATGAAGTGATCGGCA 24325 Query 68172 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 68231 || || || ||||| |||||||||||| | ||||| ||| | | || | | Sbjct 24326 ACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCACT 24385 Query 68232 TTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAACTCCTCGACATGGCCGTTT 68291 | |||| | ||||||| |||| || ||||| | |||| |||| ||| ||| ||| Sbjct 24386 TCGACATCCTGTACGGCGCCGGCACGTCGCGCGAAGGCGAAATCCTGGACCTGG--GTT- 24442 Query 68292 CCCGAGG----GCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 68347 | || | | || | |||| || || | |||| || ||| | | | |||| Sbjct 24443 -CGGACGCCAAGATCGTGGAGAAATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATC 24501 Query 68348 GGCCAGGGCAAGCCCAA-GACCGTGC 68372 |||||||||||| ||| | |||||| Sbjct 24502 GGCCAGGGCAAGGACAACGCCCGTGC 24527 >seq4107 Length=847 Score = 111 bits (122), Expect = 8e-20 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 68041 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCG 68100 |||||||||| ||| | ||| || ||| ||||| || || || || || ||| Sbjct 2 GAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGCTGAA 58 Query 68101 CTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 68160 ||||| || ||||||||| | ||| ||||| | |||| | ||||||| | || || Sbjct 59 ATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTGACGA 118 Query 68161 GGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCG 68220 || |||||||||| || ||||| ||||| |||||||||||||| ||||| || | Sbjct 119 GGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCCCTTCAA 178 Query 68221 CCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 68260 |||| || || |||| | || ||||| ||| ||||| Sbjct 179 GCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTTTCC 218 >seq1862 Length=5913 Score = 91.5 bits (100), Expect = 7e-14 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 61072 GACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCG 61131 |||||||| || ||| | || |||| |||||||||||| || ||||||||||| ||| Sbjct 5330 GACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCG 5389 Query 61132 GAAAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 61189 || ||| | || | || || || |||||| ||| ||||||||||| || | Sbjct 5390 GAGAGCTTGACCCG--TGGTTCACGAGTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGT 5447 Query 61190 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 61249 ||| || || ||||| ||||| || ||| ||||| | || || || || ||||| | Sbjct 5448 ACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTC 5507 Query 61250 CGTCGCTG 61257 | || ||| Sbjct 5508 CTTCACTG 5515 >seq1863 Length=4856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 50932 CAACCACCCCAGGACCTAGCCGCCGAGTCAG-CAGTCCTCGGCGCCATGCTTCTCTCCAA 50990 || ||||| |||||| | | |||||| ||| | || ||||||| |||||| || ||| Sbjct 3709 CAGCCACCTCAGGACATGACTGCCGAG-CAGTCGGTGCTCGGCGGCATGCTGCTGAGCAA 3651 Query 50991 GAACGCCACCCCGGCCGTCATGGAGATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 51050 | |||||| | | | |||| | ||| | || || | ||||||||||| ||| || Sbjct 3650 GGACGCCATCGCTGACGTCCTCGAGGTACTGCGTCCGGGTGACTTCTACCGGCCCGCTCA 3591 Query 51051 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCC--GGTGAGTCCGCCGACGTC 51108 | |||||||| | | ||| |||||||||| ||| || ||| |||||||| Sbjct 3590 CCAGTCCGTCTACGACGTGATCCTGGACCTCTACA--GCCGTGGCGAGCCCGCCGACCCG 3533 Query 51109 ATCACCGTCGCCGCGGAGCTCG 51130 | || ||| |||| ||||||| Sbjct 3532 GTGACGGTCTCCGCCGAGCTCG 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247407363833040