Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq6367 134 1e-26 seq249 114 9e-21 >seq6367 Length=825 Score = 134 bits (148), Expect = 1e-26 Identities = 203/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 95873 TGGCGCACGCCGGCTT-CCTGCATCTGCCGGTACCGGTCATCCATCTCCACGGTGAGCCA 95931 || ||||| |||| | ||||||| | | |||| || | ||||||||| || | ||| Sbjct 541 TGACGCAC-CCGGTTGGCCTGCATGTCCTGGTAGCGCTGTTCCATCTCCTCGACCAACCA 483 Query 95932 CCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGAT 95991 ||||| | |||| | |||| |||| | |||| | ||||| ||||| Sbjct 482 GGCCAGCGCTGCCGCTGCCTTCTTCGGCTGAGTGATGATCGGCGTGATCAGGTGCGGGAT 423 Query 95992 ACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATC 96051 ||| | ||| || ||||| || |||||||| |||||||| | ||| | | || || Sbjct 422 ACCTTCGTACGGCGTGAGCTCGACCATCTTGGGGTCGATGAGGATCATCCGTACTTCTTC 363 Query 96052 AGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGA 96111 || | |||||| ||||| || || ||||||||||| | |||||| |||| ||||| Sbjct 362 CGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCTCGACTAACCCGA 303 Query 96112 TCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 96157 ||||| | ||| |||||||| ||||||||||| || || |||||| Sbjct 302 GCCGGTCGAGCCTGCCACCAGAAGGTGGGGCATCTTCGCGAGGTTC 257 Score = 123 bits (136), Expect = 2e-23 Identities = 151/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 95651 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 95710 || ||||||| || | || |||||||||| ||||| ||||| ||||| || || ||| Sbjct 820 GTCGCGAACGCCAGACGCGAAGGCACGTTGGTCTTGATCAGGCCGGTGACGACGTCGACG 761 Query 95711 GAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATG 95770 || || |||||||| ||||| || || || || ||||| || || || ||||| | |||| Sbjct 760 GACGGGCGCTGCGTTGCCAGCACCAGGTGGATACCGGCAGCACGGGCTTTCTGCGTGATG 701 Query 95771 CGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCG 95830 ||||| || | ||||| || | | || | | ||||||||||||||||||||| Sbjct 700 CGGACGATTGCTTCTTCGACGTCGCGC--GGCGCGGTC-ATCATGAGGTCTGCCAGCTCG 644 Query 95831 TCGACCACTACCACGATGTAGGGG 95854 || || | | | |||||||||| Sbjct 643 TCCACGATCGCGAGGATGTAGGGG 620 >seq249 Length=98374 Score = 114 bits (126), Expect = 9e-21 Identities = 233/338 (69%), Gaps = 15/338 (4%) Strand=Plus/Minus Query 95517 CGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGGCAGGAAT 95575 ||||||| ||||| ||||| || | ||||| |||| | | ||| ||| || | | Sbjct 86403 CGTCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTGGTGCCCGGCGG-CATGTAG 86345 Query 95576 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGATCACCCGGCTA 95635 | | |||||| |||| || |||||||| || |||| ||| | ||| |||| | Sbjct 86344 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86285 Query 95636 TCGGT---GAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGG 95692 ||| | | || | ||| |||| | | | ||| | ||||| ||||| ||| Sbjct 86284 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86228 Query 95693 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCTGCG 95752 || |||| || ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86227 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86168 Query 95753 CGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCA 95810 ||||||||||||||||| ||| | || ||| | |||| | |||||| | || || Sbjct 86167 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGA---CCTTCTTGCCGACGATCA 86113 Query 95811 TCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATG 95848 |||| | ||| || | ||||||||||| ||||||||| Sbjct 86112 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351687161699405