Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq26 277 3e-69 seq1909 244 2e-59 seq316 118 2e-21 seq103 111 3e-19 seq59 96.9 6e-15 seq328 91.5 2e-13 seq160 86.0 1e-11 seq98 86.0 1e-11 >seq26 Length=69211 Score = 277 bits (306), Expect = 3e-69 Identities = 314/416 (75%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || ||||| || ||||| || || | |||||| || ||||| || Sbjct 65489 CTGGCCCTGATACTTGCCGCCACGGTCCTTATAGGACACTTCGCACTCTTCGTCGGATTC 65430 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 ||| ||||||||||||||||| |||||||| ||||| | ||||||| | |||| || Sbjct 65429 GAAGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATTTTTGCCGGCAAGGTGGTGGT 65370 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| ||||||||| || || || |||||||| || || |||||||||||||||||||| Sbjct 65369 GTTGGAGAACTCCAGGGTGACGTGCCCTTCCCATTCCGGCTCCAGCGGCGTCACGTTGAC 65310 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 |||||| || ||||||||||||||||| || |||| || | ||||| || ||||| Sbjct 65309 GATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAGGCAGATAGTCAGGACATTACGCGG 65250 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCT 35764 || |||||| ||||||| ||||| ||||| || ||| ||| ||||| || | | | Sbjct 65249 GATACGGAAGAATTCGACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGGATGATGCAGAC 65190 Query 35765 GTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGCGC 35823 ||| ||| | || | | | || || |||||||| |||||||| || ||| Sbjct 65189 GTCGCTCTTGA-CGTCGACGAAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTTGCCG 65131 Query 35824 TGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATA 35878 ||||||||||||||| || | |||||||||| ||| || ||||| || || || Sbjct 65130 AGTTGATGTTGGTGAACACCTTGAACTCATCGGC-GCAGCGTACGTCGTAGCCGTA 65076 >seq1909 Length=8761 Score = 244 bits (270), Expect = 2e-59 Identities = 343/477 (72%), Gaps = 11/477 (2%) Strand=Plus/Minus Query 35427 CTTTCATGGCGTCACGCTTTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCG 35486 ||| || | ||||| | || || ||||||| ||| |||||||||||| || |||||| Sbjct 5970 CTTGCAGGTCGTCAGGTCTTGGGCAGGGTCACGCCCACCTGGCCCTGGTACTTGCCGCCG 5911 Query 35487 CGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACA 35546 || ||||||||||| ||||||| | ||||| ||||| ||||||| |||||||| Sbjct 5910 CGGTCCTTGTACGACGTTTCGCACACTTCGTCGGATTCGAAGAACAGCACTTGCGCCACG 5851 Query 35547 CCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACA 35606 ||||| || ||||| | |||||||| || |||||| |||||||| |||||| Sbjct 5850 CCTTCATTGGCGTAGATTTTCGCCGGCAACGGCGTCGTGTTGGAAAACTCCAGGGTCACA 5791 Query 35607 TGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAG 35666 | |||||||| || ||||| | ||| || |||||||||||||| || |||||||| || Sbjct 5790 TAGCCTTCCCATTCCGGTTCGAACGGGGTGACGTTGACGATGATGCCGCAGCGCGCATAC 5731 Query 35667 GTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTG 35726 |||||||| |||| || | | || |||||||| || |||||||| || || || || Sbjct 5730 GTGCTCTTGCCCAGGCAAATCGTCAGCACGTTGCGGGGGATGCGGAAATACTCCACGGTA 5671 Query 35727 CGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGC---TGC 35783 || || || ||||| ||||||||| || ||||| || |||| ||| | | Sbjct 5670 CGGGCAAGCGCGAACGAGTTCGGCGGGAT---GATGCAGTAGCCCTTGCCCGACACATCG 5614 Query 35784 AGGCA---CTTGGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAG 35840 | | | || | || || | ||| || || || | | | ||||||||||||| || Sbjct 5613 ACGAAGTTATTCGCGTCAAAATCCTTGGGGTCGACGATGGTGGTGTTGATGTTGGTAAAC 5554 Query 35841 ACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATACGACGAGTTGCCGTACGA 35896 | | |||| ||||| ||| || | |||||| ||||| ||| ||||||| || Sbjct 5553 AGCTTGAACTCGTCGGC-GCAGCGGATGTCATAGCCATAGCTGGAGGTGCCGTAGGA 5498 >seq316 Length=46273 Score = 118 bits (130), Expect = 2e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 32333 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 32392 Query 120288 CCTGATGCCGGCACCATA 120305 |||| ||||||||||||| Sbjct 32393 CCTGGTGCCGGCACCATA 32410 >seq103 Length=49467 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || |||| ||||||||||||||||||||||||||||| || || | || || || || | Sbjct 34779 GTTCCAGGCGTGCGATGATTTCGGAGTTCATGCTGCGGTGATGATTGCGAGCCACCTCGG 34838 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 | |||||||| ||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 34839 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGCTG 34897 >seq59 Length=87448 Score = 96.9 bits (106), Expect = 6e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 10617 CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAA 10558 Query 122665 TCCAACACGACCCACCAGTTTCATAG 122690 ||| ||||||||||||| ||||| || Sbjct 10557 TCCCACACGACCCACCATTTTCAAAG 10532 >seq328 Length=55360 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 54122 TTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 54181 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 54182 AATCCCACACGACCCACCATTTT 54204 >seq160 Length=487619 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 400636 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 400582 >seq98 Length=772300 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 167412 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 167358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825772212940200