Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq48 125 5e-24 seq593 122 6e-23 seq456 113 3e-20 seq420 109 4e-19 seq79 100 2e-16 seq1623 98.7 6e-16 seq355 89.7 3e-13 >seq48 Length=44992 Score = 125 bits (138), Expect = 5e-24 Identities = 161/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || |||||| |||||||||||||| ||||| |||| | || Sbjct 22387 AGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCC 22328 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||| ||||| || |||||||| || | || | ||||||||||| Sbjct 22327 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTC- 22269 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 || | | || || || || || | ||||| ||| ||||||| || | || | Sbjct 22268 TTGAATCTTGGTCTTTAC--AT--TGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGA 22213 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || | ||||| |||||||||||||| Sbjct 22212 TGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 >seq593 Length=58250 Score = 122 bits (134), Expect = 6e-23 Identities = 160/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||| |||||||| ||||| || ||| |||| |||| Sbjct 29360 AGTACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 29301 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||| ||||| || ||||| || || | || | || |||||||| Sbjct 29300 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTC- 29242 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 || | | || || ||||| || | ||||| ||| |||| || || | ||| | Sbjct 29241 TTGAATCTTGGTCTTGAC--AT--TGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGA 29186 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || | ||||||||||||||| ||||| Sbjct 29185 TGGTCTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 118 bits (130), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || || | || |||| || |||||||||||||| || Sbjct 29796 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAA 29737 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| || || | || | ||||||||||| | || || ||||| | Sbjct 29736 GATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGAC--A 29679 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| ||| | ||||||| || | ||| || ||||| || || || |||| Sbjct 29678 T--TATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCT 29621 Query 34962 TTACAAAGATCTGCAT 34977 |||||||||| ||||| Sbjct 29620 TTACAAAGATTTGCAT 29605 Score = 113 bits (124), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || ||| |||| |||| || |||||||||||||| || Sbjct 29112 CTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAA 29053 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| || || | || | || |||||||| | || || || || Sbjct 29052 GATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTTAC--- 28996 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| ||| |||| || || | ||| |||||||| || || || |||| Sbjct 28995 -GTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCT 28937 Query 34962 TTACAAAGATCTGCAT 34977 |||||||||| ||||| Sbjct 28936 TTACAAAGATTTGCAT 28921 Score = 111 bits (122), Expect = 1e-19 Identities = 145/196 (74%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || ||| |||| |||| || ||||||||||||||||| Sbjct 29567 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAA 29508 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGA 34905 || |||| ||| || || | || | || |||||||| || | | || || || || | Sbjct 29507 ATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTC-TTGAATCTTGGTCTTAAC--A 29451 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| ||||||| || | || || ||||| || |||||||||| Sbjct 29450 T--TGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCT 29393 Query 34962 TTACAAAGATCTGCAT 34977 ||||||| || ||||| Sbjct 29392 TTACAAATATTTGCAT 29377 >seq456 Length=67341 Score = 113 bits (124), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || ||||| ||| | || | || |||| |||||||||||| || Sbjct 21391 CTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCCAATTGCTTTCCGGCAAA 21450 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| |||||||| || | || | ||||||||||| | || || ||||| | Sbjct 21451 GATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGAC--A 21508 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| |||| || || | ||| ||||||||||| || | ||||| Sbjct 21509 TTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTA 21568 Query 34964 ACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 21569 ACAAAGATCTGCATG 21583 >seq420 Length=40905 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| |||||||| ||||| || ||| | || | || Sbjct 14018 AGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCC 14077 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| |||| ||| || || | || | || |||||||| Sbjct 14078 TCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 14137 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||||| |||| || |||||| Sbjct 14138 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTC 14197 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || || | ||||| |||||||| ||||| || Sbjct 14198 TTGCCAGTCAATGTCTTGACAAAGATTTGCATTAT 14232 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || || ||||| ||||| || ||| |||| |||| || |||||||| || || || Sbjct 13354 CTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 13413 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||||||||||||| | || | || |||||||| | || || ||||| | Sbjct 13414 GATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGAC--A 13471 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| || |||| || || | ||| ||||||||||| ||||| |||| Sbjct 13472 T--TGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTTCCAGTGAGAGTCT 13529 Query 34962 TTACAAAGATCTGCAT 34977 | || || |||||||| Sbjct 13530 TGACGAAAATCTGCAT 13545 >seq79 Length=127859 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 10/190 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || |||||| || ||||| || ||||| ||| |||| |||| Sbjct 118833 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCC 118774 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||||||||||| |||||||| || | || | ||||||||||| Sbjct 118773 TCCAATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCT 118714 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || |||||| |||| ||||| || |||| || || | ||| | Sbjct 118713 TGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATC-----CCTCTACCTCGAGGGTAA 118659 Query 34941 TGGTCTTTCC 34950 ||||||| || Sbjct 118658 TGGTCTTACC 118649 >seq1623 Length=5066 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || | || |||| || |||||||||||||| || Sbjct 137 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAA 196 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| || || | || | || |||||||| | || || || ||| Sbjct 197 GATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTT 256 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | |||| || || | ||| |||||||| || || ||||| || || Sbjct 257 CTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAAC 316 Query 34966 AAAGATCTGCAT 34977 |||||| ||||| Sbjct 317 AAAGATTTGCAT 328 >seq355 Length=81473 Score = 89.7 bits (98), Expect = 3e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34796 ATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGT 34855 ||||| ||||| || || | || |||| || |||||||||||||| ||||| || ||| Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 34856 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT 34915 ||||| || | || | || |||||||| | || || |||||| | || | Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATAGTG 81354 Query 34916 TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 ||| | ||||| || | || |||||||| || || | |||||||||||||| ||| Sbjct 81353 TCAGATCCTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTGC 81294 Query 34976 AT 34977 || Sbjct 81293 AT 81292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325637208819095